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C++ GenericDataHeader::AddNameValParam方法代码示例

本文整理汇总了C++中GenericDataHeader::AddNameValParam方法的典型用法代码示例。如果您正苦于以下问题：C++ GenericDataHeader::AddNameValParam方法的具体用法？C++ GenericDataHeader::AddNameValParam怎么用？C++ GenericDataHeader::AddNameValParam使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类GenericDataHeader的用法示例。


在下文中一共展示了GenericDataHeader::AddNameValParam方法的12个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。

示例1: WriteSmallCelFileWithAPartialDatHeaderTest

void TestFileGenerator::WriteSmallCelFileWithAPartialDatHeaderTest()
{
	CelFileData data("small_cel_file_partial_datheader");

	// Write 
	ParameterNameValueType nvt;
	GenericDataHeader datHdr;
	datHdr.SetFileId(AffymetrixGuid::GenerateNewGuid());
	datHdr.SetFileTypeId("affymetrix-calvin-scan-acquisition");
	datHdr.SetFileCreationTime(L"2004-07-01T13:14:15Z");
	nvt.SetName(L"affymetrix-partial-dat-header");
	std::wstring datHeaderString = L"  small_cel_file_partial_datheader:CLS=25   RWS=25   XIN=1  YIN=1  VE=0         0   05/19/05 02:45:59 ScannerID:  ScannerTyp   \x14  \x14 Hg-Small.1sq \x14  \x14  \x14  \x14  \x14 570 \x14 45.200001 \x14 0.340000 \x14 1.0900 \x14 3";
	nvt.SetValueText(datHeaderString);
	datHdr.AddNameValParam(nvt);
	nvt.SetName(L"affymetrix-max-pixel-intensity");
	nvt.SetValueUInt16(46001);
	datHdr.AddNameValParam(nvt);
	nvt.SetName(L"affymetrix-min-pixel-intensity");
	nvt.SetValueUInt16(1);
	datHdr.AddNameValParam(nvt);

	// Add DAT GenericDataHeader as parent.
	data.GetFileHeader()->GetGenericDataHdr()->AddParent(datHdr);

	WriteRemaingSmallCelFileWithGridParameters(data);
}
开发者ID:，项目名称:，代码行数:26，代码来源:

示例2: AddStandardGenericDataHeader

void TestFileGenerator::AddStandardGenericDataHeader(GenericDataHeader& gdh)
{
	// Fill the GenericDataHeader.
	gdh.SetFileTypeId(SCAN_ACQUISITION_DATA_TYPE);
	gdh.SetFileId("test-dat-guid");
	gdh.SetFileCreationTime(L"2004-07-04T11:12:13Z");
	gdh.SetLocale(L"en-US");
	ParameterNameValueType nvt;
	nvt.SetName(ARRAY_TYPE_PARAM_NAME);
	nvt.SetValueText(L"Hg-U133A");
	gdh.AddNameValParam(nvt);
	nvt.SetName(ARRAY_BARCODE_PARAM_NAME);
	nvt.SetValueText(L"Barcode");
	gdh.AddNameValParam(nvt);
	nvt.SetName(L"Parameter1");
	nvt.SetValueText(L"Value1");
	gdh.AddNameValParam(nvt);

	GenericDataHeader gdhParent;
	gdhParent.SetFileTypeId(ARRAY_TYPE_IDENTIFIER);
	gdhParent.SetFileId("test-array-guid");
	gdhParent.SetFileCreationTime(L"2004-07-01T13:14:15Z");
	gdhParent.SetLocale(L"en-US");
	nvt.SetName(ARRAY_TYPE_PARAM_NAME);
	nvt.SetValueText(L"Hg-U133A");
	gdhParent.AddNameValParam(nvt);
	nvt.SetName(ARRAY_LOT_PARAM_NAME);
	nvt.SetValueText(L"Thanks alot");
	gdhParent.AddNameValParam(nvt);

	gdh.AddParent(gdhParent);
}
开发者ID:，项目名称:，代码行数:32，代码来源:

示例3: SetWStringToGenericHdr

void CHPQuantificationData::SetWStringToGenericHdr(const std::wstring& name, const std::wstring value, int32_t reserve)
{
	ParameterNameValueType paramType;
	paramType.SetName(name);
	paramType.SetValueText(value, reserve);
	GenericDataHeader* hdr = genericData.Header().GetGenericDataHdr();
	hdr->AddNameValParam(paramType);
}
开发者ID:，项目名称:，代码行数:8，代码来源:

示例4: SetFloatToGenericHdr

void CHPData::SetFloatToGenericHdr(const std::wstring& name, float value)
{
	ParameterNameValueType paramType;
	paramType.SetName(name);
	paramType.SetValueFloat(value);
	GenericDataHeader* hdr = genericData.Header().GetGenericDataHdr();
	hdr->AddNameValParam(paramType);
}
开发者ID:，项目名称:，代码行数:8，代码来源:

示例5: SetRefSequence

void CDFData::SetRefSequence(const std::string &seq)
{
	GenericDataHeader* gPtr = genericData.Header().GetGenericDataHdr();
	ParameterNameValueType paramType;
	paramType.SetName(CDF_REFSEQ_PARAM);
	paramType.SetValueAscii(seq);
	gPtr->AddNameValParam(paramType);
}
开发者ID:HenrikBengtsson，项目名称:Affx-Fusion-SDK，代码行数:8，代码来源:CDFData.cpp

示例6: 

void CDFData::SetUInt32ToGenericHdr(const std::wstring& name, u_int32_t value)
{
	ParameterNameValueType paramType;
	paramType.SetName(name);
	paramType.SetValueUInt32(value);
	GenericDataHeader* hdr = genericData.Header().GetGenericDataHdr();
	hdr->AddNameValParam(paramType);
}
开发者ID:HenrikBengtsson，项目名称:Affx-Fusion-SDK，代码行数:8，代码来源:CDFData.cpp

示例7: AddSummaryParams

void CHPQuantificationData::AddSummaryParams(const ParameterNameValueTypeList& params)
{
	ParameterNameValueType param;
	GenericDataHeader* hdr = genericData.Header().GetGenericDataHdr();
	for (ParameterNameValueTypeList::const_iterator it=params.begin(); it != params.end(); it++)
	{
		param = *it;
		param.SetName(CHIP_SUMMARY_PARAMETER_NAME_PREFIX_S + param.GetName());
		hdr->AddNameValParam(param);
	}
}
开发者ID:，项目名称:，代码行数:11，代码来源:

示例8: AddAppMetaInfo

void CHPMultiDataData::AddAppMetaInfo(const ParameterNameValueTypeList& params)
{
	ParameterNameValueType param;
	GenericDataHeader* hdr = genericData.Header().GetGenericDataHdr();
	for (ParameterNameValueTypeList::const_iterator it=params.begin(); it != params.end(); ++it)
	{
		param = *it;
		param.SetName(APPLICATION_META_INFO_PREFIX_S + param.GetName());
		hdr->AddNameValParam(param);
	}
}
开发者ID:HenrikBengtsson，项目名称:Affx-Fusion-SDK，代码行数:11，代码来源:CHPMultiDataData.cpp

示例9: AddAlgParams

void CHPMultiDataData::AddAlgParams(const ParameterNameValueTypeList& params)
{
	ParameterNameValueType param;
	GenericDataHeader* hdr = genericData.Header().GetGenericDataHdr();
	for (ParameterNameValueTypeList::const_iterator it=params.begin(); it != params.end(); it++)
	{
		param = *it;
		param.SetName(ALGORITHM_PARAM_NAME_PREFIX_S + param.GetName());
		hdr->AddNameValParam(param);
	}
}
开发者ID:HenrikBengtsson，项目名称:Affx-Fusion-SDK，代码行数:11，代码来源:CHPMultiDataData.cpp

示例10: WriteSmallCelFileWithAFullDatHeaderTest

void TestFileGenerator::WriteSmallCelFileWithAFullDatHeaderTest()	// Files converted from GCOS will have a full DatHeader
{
	CelFileData data("small_cel_file_full_datheader");

	// Write 
	ParameterNameValueType nvt;
	GenericDataHeader datHdr;
	datHdr.SetFileId(AffymetrixGuid::GenerateNewGuid());
	datHdr.SetFileTypeId("affymetrix-calvin-scan-acquisition");
	datHdr.SetFileCreationTime(L"2004-07-01T13:14:15Z");
	nvt.SetName(L"affymetrix-dat-header");
	std::wstring datHeaderString = L"[45..56789]  small_cel_file_full_datheader:CLS=25   RWS=25   XIN=1  YIN=1  VE=0         0   05/19/05 02:45:59 ScannerID:  ScannerTyp   \x14  \x14 Hg-Small.1sq \x14  \x14  \x14  \x14  \x14 570 \x14 45.200001 \x14 0.340000 \x14 1.0900 \x14 3";
	nvt.SetValueText(datHeaderString);
	datHdr.AddNameValParam(nvt);

	// Add DAT GenericDataHeader as parent.
	data.GetFileHeader()->GetGenericDataHdr()->AddParent(datHdr);

	WriteRemaingSmallCelFileWithGridParameters(data);
}
开发者ID:，项目名称:，代码行数:20，代码来源:

示例11: finish

/** 
 * No more probesets will be processed, this is a chance to finish outputting
 * results and clean up.
 * @param qMethod - Quantification method that was used.
 * @return true if success, false otherwise.
 */
bool QuantMethodExprCCCHPReport::finish(QuantMethod &qMethod) 
{
    // Sanity to check we saw all the probe sets we were expecting.
    if (m_CurrentProbeSetCount != m_Info.m_NumProbeSets) {
        Err::errAbort("QuantMethodExprCCCHPReport::finish() - Expecting: " + ToStr(m_Info.m_NumProbeSets) +
            " but got: " + ToStr(m_CurrentProbeSetCount) + ". Command Console CHP file will be corrupt.");
    }

    // Flush remaining signal entries in the buffer.
    m_ExpressionQuantificationBufferWriter.FlushBuffer();

    // Rewrite CHP files to get chip summary entires
    Verbose::out(1,"Creating final files for CHP output");
    Verbose::progressBegin(1, ToStr("Finalizing Expression CHP Files"), 
                           m_CHPFileNames.size(), 1, m_CHPFileNames.size());
    try {
        for (unsigned int chip = 0; chip < m_CHPFileNames.size(); chip++) {
            // open up tmp chp file to pull results from
            GenericData data;
            GenericFileReader reader;
            std::string filename = m_CHPFileNames[chip]+".tmp";
            reader.SetFilename(filename);
            reader.ReadHeader(data);

            GenericDataHeader* hdr = data.Header().GetGenericDataHdr();
            GenericDataHeader updateHdr;
            for (int source = 0; source < m_ChipSummaries.size(); source++) {
                ChipSummary::metricDefVec_t metricDefs = m_ChipSummaries[source]->getMetricDefs();
                for (int i = 0; i < metricDefs.size(); i++) {
                    ChipSummary::Metric metric;
                    if (!m_ChipSummaries[source]->getMetric(chip, metricDefs[i].m_name, metric)) {
                        Err::errAbort("QuantMethodExprCCCHPReport: metric '" + metricDefs[i].m_name +
                                      "' was not found");
                    }
                    std::wstring mName(CHIP_SUMMARY_PARAMETER_NAME_PREFIX);
                    mName += StringUtils::ConvertMBSToWCS(metric.m_Name);
                    ParameterNameValueType param;
                    if (hdr->FindNameValParam(mName, param) == false) {
                        Err::errAbort("QuantMethodExprCCCHPReport: metric name '" + StringUtils::ConvertWCSToMBS(mName) +
                                      "' could not be found in the header of " + filename);
                    }

                    switch (param.GetParameterType()) {
                    case ParameterNameValueType::Int8Type:
                        param.SetValueInt8((int8_t)metric.m_Integer);
                        break;
                    
                    case ParameterNameValueType::UInt8Type:
                        param.SetValueUInt8((u_int8_t)metric.m_Integer);
                        break;
                    
                    case ParameterNameValueType::Int16Type:
                        param.SetValueInt16((int16_t)metric.m_Integer);
                        break;
                    
                    case ParameterNameValueType::UInt16Type:
                        param.SetValueUInt16((u_int16_t)metric.m_Integer);
                        break;
                    
                    case ParameterNameValueType::Int32Type:
                        param.SetValueInt32((int32_t)metric.m_Integer);
                        break;
                    
                    case ParameterNameValueType::UInt32Type:
                        param.SetValueUInt32((u_int32_t)metric.m_Integer);
                        break;
                
                    case ParameterNameValueType::FloatType:
                        param.SetValueFloat((float)metric.m_Double);
                        break;
                
                    case ParameterNameValueType::TextType:
                        param.SetValueText(StringUtils::ConvertMBSToWCS(metric.m_String), (int) metric.m_String.length());
                        break;
                
                    case ParameterNameValueType::AsciiType:
                        if (metric.m_String.size() > 256) {
                            Err::errAbort("QuantMethodExprCCCHPReport: string header parameter too long, name = '" +
                                          metric.m_Name + "', value = '" + metric.m_String + "'");
                        }
                        param.SetValueAscii(metric.m_String, (int) metric.m_String.length());
                        break;

                    default:
                        Err::errAbort("QuantMethodExprCCCHPReport: unknown header parameter type found in file " +
                                      filename);
                    }
                    updateHdr.AddNameValParam(param);
                }
            }
            std::ofstream os;
            Fs::aptOpen(os, filename, std::ios::out|std::ios::binary|std::ios::in);
            if (!os) {
                Err::errAbort("QuantMethodExprCCCHPReport: file " + filename +
//.........这里部分代码省略.........
开发者ID:einon，项目名称:affymetrix-power-tools，代码行数:101，代码来源:QuantMethodExprCCCHPReport.cpp

示例12: CreateResultFile

/*
 * Create a results file with the CEL file header and other parameters.
 */
void CopyNumberResultWriter::CreateResultFile(affymetrix_fusion_io::FusionCELData& cel, const std::string& fileName)
{
    try
    {
        // Create the results file with the header.
        CHPMultiDataData *data = new CHPMultiDataData(fileName);
        data->SetEntryCount(CopyNumberMultiDataType, numberProbeSets, maxProbeSetNameLength[CopyNumberMultiDataType], columns);
		if (numberCytoRegions > 0)
			data->SetEntryCount(CytoMultiDataType, numberCytoRegions, maxProbeSetNameLength[CytoMultiDataType],cytoRegionColumns);
		if (numberGenotypeProbeSets > 0)
			data->SetEntryCount(GenotypeMultiDataType, numberGenotypeProbeSets, maxProbeSetNameLength[GenotypeMultiDataType], genotypeColumns);
        data->SetAlgName(StringUtils::ConvertMBSToWCS(algName));
        data->SetAlgVersion(StringUtils::ConvertMBSToWCS(algVersion));
        data->SetArrayType(cel.GetChipType());
        GenericDataHeader *gdh = data->GetFileHeader()->GetGenericDataHdr();
        ParameterNameValueType param;
        param.SetName(PROGRAM_NAME);
        param.SetValueText(StringUtils::ConvertMBSToWCS(programName));
        gdh->AddNameValParam(param);
        param.SetName(L"program-version");
        param.SetValueText(StringUtils::ConvertMBSToWCS(programVersion));
        gdh->AddNameValParam(param);
        param.SetName(PROGRAM_COMPANY);
        param.SetValueText(StringUtils::ConvertMBSToWCS(programCompany));
        gdh->AddNameValParam(param);
        ParameterNameValueTypeList params = algParams;
        param.SetName(L"ArraySet");
        param.SetValueText(cel.GetChipType());
        params.push_back(param);
        data->AddAlgParams(params);
        data->AddSummaryParams(summaryParams);
        DataSetHeader *dsh = data->GetDataSetHeader(CopyNumberMultiDataType);
        for (ParameterNameValueTypeList::iterator it=chrStartStop.begin(); it!=chrStartStop.end(); it++)
            dsh->AddNameValParam(*it);
        GenericData *gdata = cel.GetGenericData();
        if (gdata != NULL)
            gdh->AddParent(*gdata->Header().GetGenericDataHdr());
        CHPMultiDataFileWriter *writer = new CHPMultiDataFileWriter(*data);
        delete writer;
        delete data;

        // Create a buffer writer object
        outputFiles.clear();
        outputFiles.push_back(fileName);
        vector<MultiDataType> dataTypes;
        dataTypes.push_back(CopyNumberMultiDataType);
		if (numberCytoRegions > 0)
			dataTypes.push_back(CytoMultiDataType);
		if (numberGenotypeProbeSets > 0)
			dataTypes.push_back(GenotypeMultiDataType);
        bufferWriter = new CHPMultiDataFileBufferWriter();
        bufferWriter->Initialize(&outputFiles, dataTypes, maxProbeSetNameLength);
    }
    catch (CalvinException &ex)
    {
        string err = "Error creating the output file: " + fileName;
        wstring msg = ex.ToString();
        if (msg.empty() == false)
            err += " " + StringUtils::ConvertWCSToMBS(msg);
        throw err;
    }
    catch (...)
    {
        string err = "Error creating the output file: " + fileName;
        throw err;
    }
}
开发者ID:，项目名称:，代码行数:70，代码来源:


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