C++ FunctionTerm::setMath方法代码示例

END_TEST


START_TEST (test_ListOfFunctionTerms_functionTerms)
{
  fail_unless(G->isSetDefaultTerm() == false);
  fail_unless(G->size() == 0);

  FunctionTerm *ft = new FunctionTerm(GNS);
  ASTNode * ast = SBML_parseL3Formula("geq(1,2)");
  ft->setResultLevel(1);
  ft->setMath(ast);
  
  fail_unless(G->appendAndOwn(ft) == LIBSBML_OPERATION_SUCCESS);
  fail_unless(G->isSetDefaultTerm() == false);
  fail_unless(G->size() == 1);
}

END_TEST


START_TEST(test_ListOfFunctionTerms_assignment)
{
  FunctionTerm *ft = new FunctionTerm(GNS);
  ASTNode * ast = SBML_parseL3Formula("geq(1,2)");
  ft->setResultLevel(1);
  ft->setMath(ast);
  delete ast;
  DefaultTerm dt(GNS);
  dt.setResultLevel(1);
  G->appendAndOwn(ft);
  G->setDefaultTerm(&dt);

  ListOfFunctionTerms g2 = *G;

  fail_unless(g2.isSetDefaultTerm() == true);
  fail_unless(g2.size()   == 1);
}

//.........这里部分代码省略.........
  //    SBMLNamespaces sbmlns(3,1,"qual",1,"QUAL");
  //

  SBMLNamespaces sbmlns(3,1,"qual",1);

  //
  // (NOTES) The above code creating an SBMLNamespaces object can be replaced 
  //         with one of the following other styles.
  //
  // (1) Creates an SBMLNamespace object with a SBML core namespace and then
  //     adds a qual package namespace to the object.
  //
  //         SBMLNamespaces sbmlns(3,1);
  //         sbmlns.addPkgNamespace("qual",1);
  //
  //          OR
  //
  //         SBMLNamespaces sbmlns(3,1);
  //         sbmlns.addNamespace(QualExtension::XmlnsL3V1V1,"qual");
  //
  // (2) Creates a QualPkgNamespaces object (SBMLNamespace derived class for
  //     qual package. The class is basically used for createing an SBase
  //     derived objects defined in the qual package) with the given SBML
  //     level, version, and package version
  //
  //        QualPkgNamespaces sbmlns(3,1,1);
  //     


  // create the document

  SBMLDocument *document = new SBMLDocument(&sbmlns);

  // mark qual as required

  document->setPackageRequired("qual", true);


  // create the Model

  Model* model=document->createModel();

  // create the Compartment

  Compartment* compartment = model->createCompartment();
  compartment->setId("c");
  compartment->setConstant(true);

  //
  // Get a QualModelPlugin object plugged in the model object.
  //
  // The type of the returned value of SBase::getPlugin() function is
  // SBasePlugin*, and thus the value needs to be casted for the
  // corresponding derived class.
  //
  QualModelPlugin* mplugin
    = static_cast<QualModelPlugin*>(model->getPlugin("qual"));

  // create the QualitativeSpecies
  QualitativeSpecies* qs = mplugin->createQualitativeSpecies();
  qs->setId("s1");
  qs->setCompartment("c");
  qs->setConstant(false);
  qs->setInitialLevel(1);
  qs->setMaxLevel(4);
  qs->setName("sss");

  // create the Transition
  Transition* t = mplugin->createTransition();
  t->setId("d");
  t->setSBOTerm(1);

  Input* i = t->createInput();
  i->setId("RD");
  i->setQualitativeSpecies("s1");
  i->setTransitionEffect(INPUT_TRANSITION_EFFECT_NONE);
  i->setSign(INPUT_SIGN_NEGATIVE);
  i->setThresholdLevel(2);
  i->setName("aa");

  Output* o = t->createOutput();
  o->setId("wd");
  o->setQualitativeSpecies("s1");
  o->setTransitionEffect(OUTPUT_TRANSITION_EFFECT_PRODUCTION);
  o->setOutputLevel(2);
  o->setName("aa");

  DefaultTerm* dt = t->createDefaultTerm();
  dt->setResultLevel(2) ;

  FunctionTerm* ft = t->createFunctionTerm();
  ASTNode* math = SBML_parseL3Formula("geq(s1, 2)");
  ft->setResultLevel(1);
  ft->setMath(math);
  
  writeSBML(document,"qual_example1.xml");
  delete document;

  return 0;
}

//.........这里部分代码省略.........
		"              </apply>\n"
		"            </math>\n"
		"          </qual:functionTerm>\n"
		"        </qual:listOfFunctionTerms>\n"
    "      </qual:transition>\n"
    "    </qual:listOfTransitions>\n"
    "  </model>\n"
    "</sbml>\n"
    ;

  QualPkgNamespaces *sbmlns = new QualPkgNamespaces(3,1,1);

  // create the document

  SBMLDocument *document = new SBMLDocument(sbmlns);

  //// mark qual as required

  document->setPackageRequired("qual", true);

  // create the Model

  Model* model= new Model(sbmlns);

  // create the Compartment

  Compartment* compartment = new Compartment(sbmlns);
  compartment->setId("c");
  compartment->setConstant(true);

  fail_unless(model->addCompartment(compartment) == LIBSBML_OPERATION_SUCCESS);

  //// create the QualitativeSpecies

  QualModelPlugin* mplugin = static_cast<QualModelPlugin*>(model->getPlugin("qual"));

  fail_unless(mplugin != NULL);

  QualitativeSpecies* qs = new QualitativeSpecies(sbmlns); 
  fail_unless(qs->setId("s1")               == LIBSBML_OPERATION_SUCCESS);
  fail_unless(qs->setCompartment("c")       == LIBSBML_OPERATION_SUCCESS);
  fail_unless(qs->setConstant(false)        == LIBSBML_OPERATION_SUCCESS);
  fail_unless(qs->setInitialLevel(1)        == LIBSBML_OPERATION_SUCCESS);
  fail_unless(qs->setMaxLevel(4)            == LIBSBML_OPERATION_SUCCESS);
  fail_unless(qs->setName("sss")            == LIBSBML_OPERATION_SUCCESS);
  fail_unless(qs->setMetaId("ddd")          == LIBSBML_OPERATION_SUCCESS);

  fail_unless(mplugin->addQualitativeSpecies(qs) == LIBSBML_OPERATION_SUCCESS);

  Transition* t = new Transition(sbmlns);
  fail_unless(t->setId("d")               == LIBSBML_OPERATION_SUCCESS);
  fail_unless(t->setSBOTerm(1)            == LIBSBML_OPERATION_SUCCESS);

  Input* i = new Input(sbmlns);
  fail_unless(i->setId("RD")                 == LIBSBML_OPERATION_SUCCESS);
  fail_unless(i->setQualitativeSpecies("s1") == LIBSBML_OPERATION_SUCCESS);
  fail_unless(i->setTransitionEffect
  (InputTransitionEffect_fromString("none")) == LIBSBML_OPERATION_SUCCESS);
  fail_unless(i->setSign(InputSign_fromString("negative"))
                                             == LIBSBML_OPERATION_SUCCESS);
  fail_unless(i->setThresholdLevel(2)        == LIBSBML_OPERATION_SUCCESS);
  fail_unless(i->setName("aa")               == LIBSBML_OPERATION_SUCCESS);

  fail_unless(t->addInput(i) == LIBSBML_OPERATION_SUCCESS);

  Output* o = new Output(sbmlns);
  fail_unless(o->setId("wd")                       == LIBSBML_OPERATION_SUCCESS);
  fail_unless(o->setQualitativeSpecies("s1")       == LIBSBML_OPERATION_SUCCESS);
  fail_unless(o->setTransitionEffect
  (OutputTransitionEffect_fromString("production")) == LIBSBML_OPERATION_SUCCESS);
  fail_unless(o->setOutputLevel(2)                 == LIBSBML_OPERATION_SUCCESS);
  fail_unless(o->setName("aa")                     == LIBSBML_OPERATION_SUCCESS);

  fail_unless(t->addOutput(o) == LIBSBML_OPERATION_SUCCESS);

  FunctionTerm* ft = new FunctionTerm(sbmlns);
  ASTNode* math = SBML_parseL3Formula("geq(s1, 2)");
  fail_unless(ft->setResultLevel(2) == LIBSBML_OPERATION_SUCCESS);
  fail_unless(ft->setMath(math)     == LIBSBML_OPERATION_SUCCESS);

  fail_unless(t->addFunctionTerm(ft) == LIBSBML_OPERATION_SUCCESS);

  DefaultTerm* dt = new DefaultTerm(sbmlns);
  fail_unless(dt->setResultLevel(1) == LIBSBML_OPERATION_SUCCESS);


  fail_unless(t->setDefaultTerm(dt) == LIBSBML_OPERATION_SUCCESS);

  fail_unless(mplugin->addTransition(t) == LIBSBML_OPERATION_SUCCESS);

  fail_unless(document->setModel(model) == LIBSBML_OPERATION_SUCCESS);

  char *s2 = writeSBMLToString(document);

  fail_unless(strcmp(s1,s2) == 0); 

  free(s2);

  delete document;  
}