本文整理汇总了C++中Formula::AddMathThing方法的典型用法代码示例。如果您正苦于以下问题:C++ Formula::AddMathThing方法的具体用法?C++ Formula::AddMathThing怎么用?C++ Formula::AddMathThing使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Formula
的用法示例。
在下文中一共展示了Formula::AddMathThing方法的1个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: LoadSBML
void Module::LoadSBML(const SBMLDocument* sbmldoc)
{
//m_sbml = *sbmldoc;
const Model* sbml = sbmldoc->getModel();
string sbmlname = "";
//Function Definitions
//This is a bit weird, since functions exist outside of modules, since they can be used in any model. So we have to go to the registry to save them.
for (unsigned int func=0; func<sbml->getNumFunctionDefinitions(); func++) {
const FunctionDefinition* function = sbml->getFunctionDefinition(func);
sbmlname = getNameFromSBMLObject(function, "_F");
g_registry.NewUserFunction(&sbmlname);
for (unsigned int arg=0; arg<function->getNumArguments(); arg++) {
string argument(parseASTNodeToString(function->getArgument(arg)));
Variable* expvar = g_registry.AddVariableToCurrent(&argument);
g_registry.AddVariableToCurrentExportList(expvar);
}
string formulastring(parseASTNodeToString(function->getBody()));
Formula* formula = g_registry.NewBlankFormula();
setFormulaWithString(formulastring, formula, this);
g_registry.SetUserFunction(formula);
g_registry.GetNthUserFunction(g_registry.GetNumUserFunctions()-1)->FixNames();
}
set<string> defaultcompartments;
//Compartments
for (unsigned int comp=0; comp<sbml->getNumCompartments(); comp++) {
const Compartment* compartment = sbml->getCompartment(comp);
sbmlname = getNameFromSBMLObject(compartment, "_C");
if (compartment->getSBOTerm() == 410) {
//The 'implicit compartment'
defaultcompartments.insert(sbmlname);
continue;
}
if (sbmlname == DEFAULTCOMP && compartment->getConstant() && compartment->isSetSize() && compartment->getSize() == 1.0) {
defaultcompartments.insert(sbmlname);
continue;
//LS NOTE: we assume this was created with Antimony, and ignore the auto-generated 'default compartment'
// Later versions of antimony now set the SBO terms to 410, so we might not need this code very long.
}
Variable* var = AddOrFindVariable(&sbmlname);
if (compartment->isSetName()) {
var->SetDisplayName(compartment->getName());
}
var->SetType(varCompartment);
Formula* formula = g_registry.NewBlankFormula();
if (compartment->isSetSize()) {
formula->AddNum(compartment->getSize());
var->SetFormula(formula);
}
if (compartment->isSetUnits()) {
var->SetUnits(compartment->getUnits());
}
}
//Species
for (unsigned int spec=0; spec<sbml->getNumSpecies(); spec++) {
const Species* species = sbml->getSpecies(spec);
sbmlname = getNameFromSBMLObject(species, "_S");
Variable* var = AddOrFindVariable(&sbmlname);
if (species->isSetName()) {
var->SetDisplayName(species->getName());
}
var->SetType(varSpeciesUndef);
//Setting the formula
Formula* formula = g_registry.NewBlankFormula();
if (species->isSetInitialAmount()) {
double amount = species->getInitialAmount();
formula->AddNum(amount);
if (amount != 0 && defaultcompartments.find(species->getCompartment()) == defaultcompartments.end()) {
Variable* compartment = AddOrFindVariable(&(species->getCompartment()));
Formula* compform = compartment->GetFormula();
if (!compform->IsOne()) {
formula->AddMathThing('/');
formula->AddVariable(compartment);
}
}
var->SetFormula(formula);
}
else if (species->isSetInitialConcentration()) {
formula->AddNum(species->getInitialConcentration());
var->SetFormula(formula);
}
//Anything more complicated is set in a Rule, which we'll get to later.
if (species->getConstant() || species->getBoundaryCondition()) {
//Since all species are variable by default, we only set this explicitly if true.
var->SetIsConst(true);
}
if (defaultcompartments.find(species->getCompartment()) == defaultcompartments.end()) {
Variable* compartment = AddOrFindVariable(&(species->getCompartment()));
compartment->SetType(varCompartment);
var->SetCompartment(compartment);
}
if (species->isSetUnits()) {
var->SetUnits(species->getUnits());
}
}
//.........这里部分代码省略.........