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C++ CCopasiParameter::getValue方法代码示例

本文整理汇总了C++中CCopasiParameter::getValue方法的典型用法代码示例。如果您正苦于以下问题:C++ CCopasiParameter::getValue方法的具体用法?C++ CCopasiParameter::getValue怎么用?C++ CCopasiParameter::getValue使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在CCopasiParameter的用法示例。


在下文中一共展示了CCopasiParameter::getValue方法的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的C++代码示例。

示例1: initializeParameter

void CTauLeapMethod::initializeParameter()
{
  CCopasiParameter *pParm;

  assertParameter("Epsilon", CCopasiParameter::DOUBLE, (C_FLOAT64) 0.001);
  assertParameter("Max Internal Steps", CCopasiParameter::UINT, (unsigned C_INT32) 10000);
  assertParameter("Use Random Seed", CCopasiParameter::BOOL, false);
  assertParameter("Random Seed", CCopasiParameter::UINT, (unsigned C_INT32) 1);

  // Check whether we have a method with the old parameter names
  if ((pParm = getParameter("TAULEAP.Tau")) != NULL)
    {
      removeParameter("TAULEAP.Tau");

      if ((pParm = getParameter("TAULEAP.UseRandomSeed")) != NULL)
        {
          setValue("Use Random Seed", *pParm->getValue().pBOOL);
          removeParameter("TAULEAP.UseRandomSeed");
        }

      if ((pParm = getParameter("TAULEAP.RandomSeed")) != NULL)
        {
          setValue("Random Seed", *pParm->getValue().pUINT);
          removeParameter("TAULEAP.RandomSeed");
        }
    }
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:27,代码来源:CTauLeapMethod.cpp

示例2: CTSSAProblem

CTSSATask::CTSSATask(const CTSSATask & src,
                     const CCopasiContainer * pParent):
  CCopasiTask(src, pParent),
  mTimeSeriesRequested(src.mTimeSeriesRequested),
  mTimeSeries(),
  mpTSSAProblem(NULL),
  mpTSSAMethod(NULL),
  mpCurrentState(NULL),
  mpCurrentTime(NULL)
{
  mpProblem =
    new CTSSAProblem(*static_cast< CTSSAProblem * >(src.mpProblem), this);

  mpMethod = createMethod(src.mpMethod->getSubType());
  * mpMethod = * src.mpMethod;
  mpMethod->elevateChildren();

  this->add(mpMethod, true);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:26,代码来源:CTSSATask.cpp

示例3: CCopasiTask

CTrajectoryTask::CTrajectoryTask(const CCopasiContainer * pParent):
  CCopasiTask(CCopasiTask::timeCourse, pParent),
  mTimeSeriesRequested(true),
  mTimeSeries(),
  mpTrajectoryProblem(NULL),
  mpSteadyState(NULL),
  mpTrajectoryMethod(NULL),
  mUpdateMoieties(false),
  mpCurrentState(NULL),
  mpCurrentTime(NULL),
  mOutputStartTime(0.0),
  mpLessOrEqual(&fle),
  mpLess(&fl)
{
  mpProblem = new CTrajectoryProblem(this);
  mpMethod = createMethod(CCopasiMethod::deterministic);
  this->add(mpMethod, true);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:25,代码来源:CTrajectoryTask.cpp

示例4: initializeParameter

void CLyapWolfMethod::initializeParameter()
{
  assertParameter("Orthonormalization Interval", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0);
  assertParameter("Overall time", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1000.0);
  assertParameter("Relative Tolerance", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0e-6);
  assertParameter("Absolute Tolerance", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0e-12);
  assertParameter("Max Internal Steps", CCopasiParameter::UINT, (unsigned C_INT32) 10000);

  // Check whether we have an (obsolete) parameter "Use Default Absolute Tolerance"
  CCopasiParameter *pParm;

  if ((pParm = getParameter("Use Default Absolute Tolerance")) != NULL)
    {
      C_FLOAT64 NewValue;

      if (*pParm->getValue().pBOOL)
        {
          // The default
          NewValue = 1.e-12;
        }
      else
        {
          NewValue = *getValue("Absolute Tolerance").pUDOUBLE;
        }

      setValue("Absolute Tolerance", NewValue);
      removeParameter("Use Default Absolute Tolerance");
    }

  // These parameters are no longer supported.
  removeParameter("Adams Max Order");
  removeParameter("BDF Max Order");
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:33,代码来源:CLyapWolfMethod.cpp

示例5: elevateChildren

bool CFitItem::elevateChildren()
{
  // The functionality of SavedValue is no handled more transparently
  // through the StartValue. Therefore, in case we encounter an old file
  // we need to copy its value.
  CCopasiParameter *pSavedValue = getParameter("SavedValue");

  if (pSavedValue)
    {
      setStartValue(*pSavedValue->getValue().pDOUBLE);
      removeParameter("SavedValue");
    }

  mpGrpAffectedExperiments =
    elevate<CCopasiParameterGroup, CCopasiParameterGroup>(mpGrpAffectedExperiments);

  if (!mpGrpAffectedExperiments) return false;

  mpGrpAffectedCrossValidations =
    elevate<CCopasiParameterGroup, CCopasiParameterGroup>(mpGrpAffectedCrossValidations);

  if (!mpGrpAffectedCrossValidations) return false;

  return true;
}
开发者ID:bmoreau,项目名称:COPASI,代码行数:25,代码来源:CFitItem.cpp

示例6: assertParameter

void CExperimentObjectMap::CDataColumn::initializeParameter()
{
  mpRole = (CExperiment::Type *)
           assertParameter("Role", CCopasiParameter::UINT, (unsigned C_INT32) CExperiment::ignore)->getValue().pUINT;

  CCopasiParameter * pParm = getParameter("Object CN");

  if (pParm != NULL)
    mpObjectCN = pParm->getValue().pCN;

  pParm = getParameter("Weight");

  if (pParm != NULL)
    mpScale = pParm->getValue().pUDOUBLE;

  elevateChildren();
}
开发者ID:ShuoLearner,项目名称:COPASI,代码行数:17,代码来源:CExperimentObjectMap.cpp

示例7: initialize

bool CTSSATask::initialize(const OutputFlag & of,
                           COutputHandler * pOutputHandler,
                           std::ostream * pOstream)
{
  assert(mpProblem && mpMethod);

  mpTSSAProblem = dynamic_cast<CTSSAProblem *>(mpProblem);
  assert(mpTSSAProblem);

  mpTSSAMethod = dynamic_cast<CTSSAMethod *>(mpMethod);
  assert(mpTSSAMethod);

  mpTSSAMethod->setProblem(mpTSSAProblem);

  bool success = mpMethod->isValidProblem(mpProblem);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;

  pdelete(mpCurrentState);
  mpCurrentState = new CState(mpTSSAProblem->getModel()->getState());
  mpCurrentTime = &mpCurrentState->getTime();

  // Handle the time series as a regular output.
  mTimeSeriesRequested = mpTSSAProblem->timeSeriesRequested();

  if (pOutputHandler != NULL)
    {
      if (mTimeSeriesRequested)
        {
          mTimeSeries.allocate(mpTSSAProblem->getStepNumber());
          pOutputHandler->addInterface(&mTimeSeries);
        }
      else
        {
          mTimeSeries.clear();
        }
    }

//NEW

  mpTSSAMethod->setModel(mpTSSAProblem->getModel());

  mpTSSAMethod->predifineAnnotation();

//

  if (!CCopasiTask::initialize(of, pOutputHandler, pOstream)) success = false;

  return success;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:55,代码来源:CTSSATask.cpp

示例8: initialize

bool CCrossSectionTask::initialize(const OutputFlag & of,
                                   COutputHandler * pOutputHandler,
                                   std::ostream * pOstream)
{
  assert(mpProblem && mpMethod);

  mpCrossSectionProblem = dynamic_cast<CCrossSectionProblem *>(mpProblem);
  assert(mpCrossSectionProblem);

  mpTrajectoryMethod = dynamic_cast<CTrajectoryMethod *>(mpMethod);
  assert(mpTrajectoryMethod);

  mpTrajectoryMethod->setProblem(mpCrossSectionProblem);

  bool success = mpMethod->isValidProblem(mpProblem);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;

  pdelete(mpCurrentState);
  mpCurrentState = new CState(mpCrossSectionProblem->getModel()->getState());
  mpCurrentTime = &mpCurrentState->getTime();

  //init the ring buffer for the states
  mStatesRing.resize(RING_SIZE);
  mStatesRingCounter = 0;

  // Handle the time series as a regular output.
  mTimeSeriesRequested = true;//mpCrossSectionProblem->timeSeriesRequested();

  if ((pOutputHandler != NULL) &&
      mTimeSeriesRequested &&
      (of & CCopasiTask::TIME_SERIES))
    {
      mTimeSeries.allocate(20);
      pOutputHandler->addInterface(&mTimeSeries);
    }
  else
    {
      mTimeSeries.clear();
    }

  createEvent();

  if (!CCopasiTask::initialize(of, pOutputHandler, pOstream)) success = false;

  return success;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:52,代码来源:CCrossSectionTask.cpp

示例9: initializeParameter

void CSteadyStateMethod::initializeParameter()
{
  CCopasiParameter *pParm;

  assertParameter("Resolution", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0e-009);
  mpSSResolution = (C_FLOAT64*)getValue("Resolution").pUDOUBLE;
  mpDerivationResolution = (C_FLOAT64*)getValue("Resolution").pUDOUBLE;

  assertParameter("Derivation Factor", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0e-003);
  mpDerivationFactor = (C_FLOAT64*)getValue("Derivation Factor").pUDOUBLE;

  // Check whether we have a method with the old parameter names
  if ((pParm = getParameter("Newton.DerivationFactor")) != NULL)
    {
      setValue("Derivation Factor", *pParm->getValue().pUDOUBLE);
      removeParameter("Newton.DerivationFactor");
    }

  if ((pParm = getParameter("Newton.Resolution")) != NULL)
    {
      setValue("Resolution", *pParm->getValue().pUDOUBLE);
      removeParameter("Newton.Resolution");
    }
}
开发者ID:ShuoLearner,项目名称:COPASI,代码行数:24,代码来源:CSteadyStateMethod.cpp

示例10: load

void CTrajectoryTask::load(CReadConfig & configBuffer)
{
  configBuffer.getVariable("Dynamics", "bool", &mScheduled,
                           CReadConfig::LOOP);

  pdelete(mpProblem);
  mpProblem = new CTrajectoryProblem(this);
  ((CTrajectoryProblem *) mpProblem)->load(configBuffer);

  pdelete(mpMethod);
  mpMethod = CTrajectoryMethod::createMethod();
  this->add(mpMethod, true);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;

  ((CTrajectoryMethod *)mpMethod)->setProblem((CTrajectoryProblem *) mpProblem);
}
开发者ID:cpanchal,项目名称:COPASI,代码行数:20,代码来源:CTrajectoryTask.cpp

示例11: CCopasiTask

CTSSATask::CTSSATask(const CCopasiContainer * pParent):
  CCopasiTask(CCopasiTask::tssAnalysis, pParent),
  mTimeSeriesRequested(true),
  mTimeSeries(),
  mpTSSAProblem(NULL),
  mpTSSAMethod(NULL),
  mpCurrentState(NULL),
  mpCurrentTime(NULL)
{
  mpProblem = new CTSSAProblem(this);
  mpMethod = createMethod(CCopasiMethod::tssILDM);
  this->add(mpMethod, true);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:20,代码来源:CTSSATask.cpp

示例12: setMethodType

bool CCrossSectionTask::setMethodType(const int & type)
{
  CCopasiMethod::SubType Type = (CCopasiMethod::SubType) type;

  if (!isValidMethod(Type, ValidMethods)) return false;

  if (mpMethod->getSubType() == Type) return true;

  pdelete(mpMethod);
  mpMethod = createMethod(Type);
  this->add(mpMethod, true);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;

  return true;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:21,代码来源:CCrossSectionTask.cpp

示例13: initialize

bool CTrajectoryTask::initialize(const OutputFlag & of,
                                 COutputHandler * pOutputHandler,
                                 std::ostream * pOstream)
{
  assert(mpProblem && mpMethod);

  mpTrajectoryProblem = dynamic_cast<CTrajectoryProblem *>(mpProblem);
  assert(mpTrajectoryProblem);

  mpTrajectoryMethod = dynamic_cast<CTrajectoryMethod *>(mpMethod);
  assert(mpTrajectoryMethod);

  mpTrajectoryMethod->setProblem(mpTrajectoryProblem);

  bool success = mpMethod->isValidProblem(mpProblem);

  CCopasiParameter * pParameter = mpMethod->getParameter("Integrate Reduced Model");

  if (pParameter != NULL)
    mUpdateMoieties = *pParameter->getValue().pBOOL;
  else
    mUpdateMoieties = false;

  pdelete(mpCurrentState);
  mpCurrentState = new CState(mpTrajectoryProblem->getModel()->getState());
  mpCurrentTime = &mpCurrentState->getTime();

  //mpOutputStartTime = & mpTrajectoryProblem->getOutputStartTime();

  // Handle the time series as a regular output.
  mTimeSeriesRequested = mpTrajectoryProblem->timeSeriesRequested();

  if ((pOutputHandler != NULL) &&
      mTimeSeriesRequested &&
      (of & CCopasiTask::TIME_SERIES))
    {
      mTimeSeries.allocate(mpTrajectoryProblem->getStepNumber());
      pOutputHandler->addInterface(&mTimeSeries);
    }
  else
    {
      mTimeSeries.clear();
    }

  mpTrajectoryProblem->getModel()->getMathModel()->getProcessQueue().setContinueSimultaneousEvents(mpTrajectoryProblem->getContinueSimultaneousEvents());

  if (mpTrajectoryProblem->getStartInSteadyState())
    {
      mpSteadyState =
        dynamic_cast<CSteadyStateTask *>((*mpTrajectoryProblem->getObjectDataModel()->getTaskList())["Steady-State"]);

      if (mpSteadyState == NULL) fatalError();

      mpSteadyState->initialize(CCopasiTask::NO_OUTPUT, NULL, NULL);
    }
  else
    {
      mpSteadyState = NULL;
    }

  if (!CCopasiTask::initialize(of, pOutputHandler, pOstream)) success = false;

  return success;
}
开发者ID:PriKalra,项目名称:COPASI,代码行数:64,代码来源:CTrajectoryTask.cpp

示例14: slotBtnOk

void CQPreferenceDialog::slotBtnOk()
{
  // We need to commit the changes
  unsigned C_INT32 newMaxFiles = 0;
  CConfigurationFile * configFile = CCopasiRootContainer::getConfiguration();

  QList< QTreeWidgetItem *> Items = mpTreeWidget->findItems("Max Last Visited Files", 0, 0);
  CCopasiParameter * pParameter = configFile->getRecentFiles().getParameter("MaxFiles");

  if (Items.size() > 0 &&
      pParameter != NULL)
    {
      newMaxFiles = Items[0]->text(COL_VALUE).toUInt();
      unsigned C_INT32 maxFiles = *pParameter->getValue().pUINT;

      if (newMaxFiles > 0 && newMaxFiles <= 20)
        pParameter->setValue(newMaxFiles);
      else
        {
          CQMessageBox::critical(this, "Incorrect Setting",
                                 "Max Last Visited Files should be a number between 1 and 20.",
                                 QMessageBox::Ok, QMessageBox::Ok);
          Items[0]->setText(COL_VALUE, QString::number(maxFiles));

          return;
        }
    }

  Items = mpTreeWidget->findItems("Max Last Visited SBML Files", 0, 0);
  pParameter = configFile->getRecentSBMLFiles().getParameter("MaxFiles");

  if (Items.size() > 0 &&
      pParameter != NULL)
    {
      newMaxFiles = Items[0]->text(COL_VALUE).toUInt();
      unsigned C_INT32 maxFiles = *pParameter->getValue().pUINT;

      if (newMaxFiles > 0 && newMaxFiles <= 20)
        pParameter->setValue(newMaxFiles);
      else
        {
          CQMessageBox::critical(this, "Incorrect Setting", "Max Last Visited SBML Files should be a number between 1 and 20.",
                                 QMessageBox::Ok, QMessageBox::Ok);

          Items[0]->setText(COL_VALUE, QString::number(maxFiles));

          return;
        }
    }

  Items = mpTreeWidget->findItems("Application for opening URLs", 0, 0);
  pParameter = configFile->getParameter("Application for opening URLs");

  if (Items.size() > 0 &&
      pParameter != NULL)
    {

      if (Items[0]->text(COL_VALUE) != FROM_UTF8(*pParameter->getValue().pSTRING))
        pParameter->setValue(std::string(TO_UTF8(Items[0]->text(COL_VALUE))));
    }

  Items = mpTreeWidget->findItems("Validate Units", 0, 0);
  pParameter = configFile->getParameter("Validate Units");

  if (Items.size() > 0 &&
      pParameter != NULL)
    {
      pParameter->setValue(Items[0]->text(COL_VALUE).toUpper() == "YES");
    }

  Items = mpTreeWidget->findItems("Use OpenGL", 0, 0);
  pParameter = configFile->getParameter("Use OpenGL");

  if (Items.size() > 0 &&
      pParameter != NULL)
    {
      pParameter->setValue(Items[0]->text(COL_VALUE).toUpper() == "YES");
    }

  Items = mpTreeWidget->findItems("Use Advanced Editing", 0, 0);
  pParameter = configFile->getParameter("Use Advanced Editing");

  if (Items.size() > 0 &&
      pParameter != NULL)
    {
      pParameter->setValue(Items[0]->text(COL_VALUE).toUpper() == "YES");
    }

  done(1);
}
开发者ID:kgatjens,项目名称:COPASI,代码行数:90,代码来源:CQPreferenceDialog.cpp

示例15: initializeParameter

void CLsodaMethod::initializeParameter()
{
  CCopasiParameter *pParm;

  mpReducedModel =
    assertParameter("Integrate Reduced Model", CCopasiParameter::BOOL, (bool) false)->getValue().pBOOL;
  mpRelativeTolerance =
    assertParameter("Relative Tolerance", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0e-6)->getValue().pUDOUBLE;
  mpAbsoluteTolerance =
    assertParameter("Absolute Tolerance", CCopasiParameter::UDOUBLE, (C_FLOAT64) 1.0e-12)->getValue().pUDOUBLE;
  mpMaxInternalSteps =
    assertParameter("Max Internal Steps", CCopasiParameter::UINT, (unsigned C_INT32) 10000)->getValue().pUINT;

  // Check whether we have a method with the old parameter names
  if ((pParm = getParameter("LSODA.RelativeTolerance")) != NULL)
    {
      *mpRelativeTolerance = *pParm->getValue().pUDOUBLE;
      removeParameter("LSODA.RelativeTolerance");

      if ((pParm = getParameter("LSODA.AbsoluteTolerance")) != NULL)
        {
          *mpAbsoluteTolerance = *pParm->getValue().pUDOUBLE;
          removeParameter("LSODA.AbsoluteTolerance");
        }

      if ((pParm = getParameter("LSODA.AdamsMaxOrder")) != NULL)
        {
          removeParameter("LSODA.AdamsMaxOrder");
        }

      if ((pParm = getParameter("LSODA.BDFMaxOrder")) != NULL)
        {
          removeParameter("LSODA.BDFMaxOrder");
        }

      if ((pParm = getParameter("LSODA.MaxStepsInternal")) != NULL)
        {
          *mpMaxInternalSteps = *pParm->getValue().pUINT;
          removeParameter("LSODA.MaxStepsInternal");
        }
    }

  // Check whether we have a method with "Use Default Absolute Tolerance"
  if ((pParm = getParameter("Use Default Absolute Tolerance")) != NULL)
    {
      C_FLOAT64 NewValue;

      if (*pParm->getValue().pBOOL)
        {
          // The default
          NewValue = 1.e-12;
        }
      else
        {
          C_FLOAT64 OldValue = *mpAbsoluteTolerance;
          CCopasiDataModel* pDataModel = getObjectDataModel();
          assert(pDataModel != NULL);
          CModel * pModel = pDataModel->getModel();

          if (pModel == NULL)
            // The default
            NewValue = 1.e-12;
          else
            {
              const CCopasiVectorNS< CCompartment > & Compartment = pModel->getCompartments();
              unsigned C_INT32 i, imax;
              C_FLOAT64 Volume = DBL_MAX;

              for (i = 0, imax = Compartment.size(); i < imax; i++)
                if (Compartment[i]->getValue() < Volume)
                  Volume = Compartment[i]->getValue();

              if (Volume == DBL_MAX)
                // The default
                NewValue = 1.e-12;
              else
                // Invert the scaling as best as we can
                NewValue = OldValue / (Volume * pModel->getQuantity2NumberFactor());
            }
        }

      *mpAbsoluteTolerance = NewValue;
      removeParameter("Use Default Absolute Tolerance");
    }

  // These parameters are no longer supported.
  removeParameter("Adams Max Order");
  removeParameter("BDF Max Order");
}
开发者ID:mgaldzic,项目名称:copasi_api,代码行数:89,代码来源:CLsodaMethod.cpp


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