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C++ CCopasiDataModel::getModel方法代码示例

本文整理汇总了C++中CCopasiDataModel::getModel方法的典型用法代码示例。如果您正苦于以下问题：C++ CCopasiDataModel::getModel方法的具体用法？C++ CCopasiDataModel::getModel怎么用？C++ CCopasiDataModel::getModel使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类CCopasiDataModel的用法示例。


在下文中一共展示了CCopasiDataModel::getModel方法的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。

示例1: insertRows

bool CQSpecieDM::insertRows(int position, int rows, const QModelIndex&)
{
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];

  if (pDataModel->getModel()->getCompartments().size() == 0)
    {
      pDataModel->getModel()->createCompartment("compartment");
      emit notifyGUI(ListViews::COMPARTMENT, ListViews::ADD, pDataModel->getModel()->getCompartments()[0]->getKey());
    }

  beginInsertRows(QModelIndex(), position, position + rows - 1);

  for (int row = 0; row < rows; ++row)
    {
      mpSpecies =
        pDataModel->getModel()->createMetabolite(TO_UTF8(createNewName("species", COL_NAME_SPECIES)), "", 1.0, CModelEntity::REACTIONS);

      if (mNotify)
        {
          emit notifyGUI(ListViews::METABOLITE, ListViews::ADD, mpSpecies->getKey());
        }
    }

  endInsertRows();

  return true;
}
开发者ID:ShuoLearner，项目名称:COPASI，代码行数:27，代码来源:CQSpecieDM.cpp

示例2: deleteCompartment

void CQCompartment::deleteCompartment()
{

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
  assert(pDataModel != NULL);
  CModel * pModel = pDataModel->getModel();

  if (pModel == NULL) return;

  if (mpCompartment == NULL) return;

  QMessageBox::StandardButton choice =
    CQMessageBox::confirmDelete(this, "compartment",
                                FROM_UTF8(mpCompartment->getObjectName()),
                                mpCompartment->getDeletedObjects());

  switch (choice)
    {
      case QMessageBox::Ok:
      {
        pDataModel->getModel()->removeCompartment(mKey);

        protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, mKey);
        protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, ""); //Refresh all as there may be dependencies.
        break;
      }

      default:
        break;
    }

  mpListView->switchToOtherWidget(111, "");
}
开发者ID:PriKalra，项目名称:COPASI，代码行数:34，代码来源:CQCompartment.cpp

示例3: slotBtnDelete

void CQCompartment::slotBtnDelete()
{
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
  assert(pDataModel != NULL);
  CModel * pModel = pDataModel->getModel();

  if (pModel == NULL) return;

  if (mpCompartment == NULL) return;

  QMessageBox::StandardButton choice =
    CQMessageBox::confirmDelete(this, "compartment",
                                FROM_UTF8(mpCompartment->getObjectName()),
                                mpCompartment->getDeletedObjects());

  switch (choice)
    {
      case QMessageBox::Ok:
      {
        unsigned C_INT32 Index =
          pDataModel->getModel()->getCompartments().getIndex(mpCompartment->getObjectName());
        pDataModel->getModel()->removeCompartment(mKey);
        std::string deletedKey = mKey;
        //std::string moveToKey = "";

        unsigned C_INT32 Size =
          pDataModel->getModel()->getCompartments().size();

        QObject *pParent = parent();
        CTabWidget * pTabWidget = NULL;

        while (pParent != NULL &&
               (pTabWidget = dynamic_cast< CTabWidget *>(pParent)) == NULL)
          {
            pParent = pParent->parent();
          }

        if (pTabWidget != NULL)
          {
            if (Size > 0)
              pTabWidget->enter(pDataModel->getModel()->getCompartments()[std::min(Index, Size - 1)]->getKey());
            else
              pTabWidget->enter("");
          }

        protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, deletedKey);
        protectedNotify(ListViews::COMPARTMENT, ListViews::DELETE, ""); //Refresh all as there may be dependencies.
        break;
      }

      default:
        break;
    }
}
开发者ID:mgaldzic，项目名称:copasi_api，代码行数:55，代码来源:CQCompartment.cpp

示例4: 

void test000053::test4_bug1000()
{
  // load the CPS file
  // export to SBML
  // check the resulting SBML model
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  CPPUNIT_ASSERT(pDataModel->importSBMLFromString(test000053::MODEL_STRING_4));
  const CModel* pModel = pDataModel->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  CPPUNIT_ASSERT(pModel->getCompartments().size() == 1);
  CPPUNIT_ASSERT(pModel->getModelValues().size() == 0);
  CPPUNIT_ASSERT(pModel->getReactions().size() == 0);
  CPPUNIT_ASSERT(pModel->getMetabolites().size() == 1);
  const CMetab* pMetab = pModel->getMetabolites()[0];
  CPPUNIT_ASSERT(pMetab != NULL);
  CPPUNIT_ASSERT(pMetab->getObjectName() == "A");
  CPPUNIT_ASSERT(pMetab->getStatus() == CModelEntity::ASSIGNMENT);
  const CExpression* pExpr = pMetab->getExpressionPtr();
  CPPUNIT_ASSERT(pExpr != NULL);
  const CEvaluationNode* pRoot = pExpr->getRoot();
  CPPUNIT_ASSERT(pRoot != NULL);
  CPPUNIT_ASSERT(pRoot->mainType() == CEvaluationNode::T_NUMBER);
  CPPUNIT_ASSERT((pRoot->subType()) == CEvaluationNode::S_DOUBLE);
  const CEvaluationNodeNumber* pNumberNode = dynamic_cast<const CEvaluationNodeNumber*>(pRoot);
  CPPUNIT_ASSERT(pNumberNode != NULL);
  CPPUNIT_ASSERT(fabs((pNumberNode->getValue() - 1.5) / 1.5) < 1e-6);
}
开发者ID:，项目名称:，代码行数:27，代码来源:

示例5: editSlider

void SliderDialog::editSlider()
{
  SliderSettingsDialog* pSettingsDialog = new SliderSettingsDialog(this);
  // set the list of sliders that is already known
  CCopasiObject* object = (CCopasiObject*)getTaskForFolderId(mCurrentFolderId);

  if (!object) return;

  CCopasiDataModel * pDataModel = object->getObjectDataModel();
  assert(pDataModel != NULL);
  pSettingsDialog->setModel(pDataModel->getModel());

  std::vector<CSlider*>* pVector = getCSlidersForCurrentFolderId();
  pSettingsDialog->setDefinedSliders(*pVector);

  //pSettingsDialog->disableObjectChoosing(true);

  pSettingsDialog->setSlider(mpCurrSlider->getCSlider());

  if (pSettingsDialog->exec() == QDialog::Accepted)
    {
      addSlider(pSettingsDialog->getSlider());
      mpCurrSlider->updateSliderData();
      /*
      if ((!mpCurrSlider->isEnabled()) && mpCurrSlider->getCSlider()->compile())
        {
          mpCurrSlider->setEnabled(true);
        }
        */
    }

  delete pSettingsDialog;
  delete pVector;
}
开发者ID:，项目名称:，代码行数:34，代码来源:

示例6: catch

void test000080::test_mass_action_recognition_bug()
{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;

  try
    {
      CPPUNIT_ASSERT(pDataModel->importSBMLFromString(test000080::MODEL_STRING1));
    }
  catch (...)
    {
      // there should not be an exception
      CPPUNIT_ASSERT(false);
    }

  const CModel* pModel = pDataModel->getModel();

  CPPUNIT_ASSERT(pModel != NULL);

  CPPUNIT_ASSERT(pModel->getReactions().size() == 1);

  const CReaction* pReaction = pModel->getReactions()[0];

  CPPUNIT_ASSERT(pReaction != NULL);

  const CFunction* pFun = pReaction->getFunction();

  CPPUNIT_ASSERT(pFun != NULL);

  CPPUNIT_ASSERT(pFun->getType() == CEvaluationTree::UserDefined);
}
开发者ID:ShuoLearner，项目名称:COPASI，代码行数:30，代码来源:test000080.cpp

示例7: CCopasiUndoCommand

RemoveGlobalQuantityRowsCommand::RemoveGlobalQuantityRowsCommand(
  QModelIndexList rows, CQGlobalQuantityDM * pGlobalQuantityDM, const QModelIndex&)
  : CCopasiUndoCommand("Global Quantity", GLOBALQUANTITY_REMOVE)
  , mpGlobalQuantityDM(pGlobalQuantityDM)
  , mRows(rows)
  , mpGlobalQuantityData()
  , mFirstTime(true)
{

  CCopasiDataModel * pDataModel = pGlobalQuantityDM->getDataModel();
  assert(pDataModel != NULL);
  CModel * pModel = pDataModel->getModel();
  assert(pModel != NULL);

  QModelIndexList::const_iterator i;

  for (i = rows.begin(); i != rows.end(); ++i)
    {
      CModelValue* pModelValue = &pModel->getModelValues()[i->row()];

      if (pGlobalQuantityDM->isDefaultRow(*i) || pModelValue == NULL)
        continue;

      UndoGlobalQuantityData *data = new UndoGlobalQuantityData(pModelValue);
      mpGlobalQuantityData.append(data);
    }

  setText(QObject::tr(": Removed Global Quantity"));
}
开发者ID:，项目名称:，代码行数:29，代码来源:

示例8: initObjects

void CCopasiTask::initObjects()
{
    addObjectReference("Output counter", mOutputCounter, CCopasiObject::ValueInt);
    new CCopasiTimer(CCopasiTimer::WALL, this);
    new CCopasiTimer(CCopasiTimer::PROCESS, this);

    CCopasiDataModel *pDataModel = getObjectDataModel();

    if (pDataModel != NULL)
    {
        if (pDataModel->getModel() != NULL)
        {
            setMathContainer(&pDataModel->getModel()->getMathContainer());
        }
    }
}
开发者ID:copasi，项目名称:COPASI，代码行数:16，代码来源:CCopasiTask.cpp

示例9: assert

RemoveAllReactionRowsCommand::RemoveAllReactionRowsCommand(CQReactionDM * pReaDM, const QModelIndex&)
{
  mpReactionDM = pReaDM;

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
  assert(pDataModel != NULL);
  CModel * pModel = pDataModel->getModel();

  assert(pModel != NULL);

  for (int i = 0; i != pReaDM->rowCount() - 1; ++i)
    {
      UndoReactionData *data = new UndoReactionData();
      CReactionInterface* ri = new CReactionInterface((*CCopasiRootContainer::getDatamodelList())[0]->getModel());

      if (pModel->getReactions()[i])
        {
          data->setName(pModel->getReactions()[i]->getObjectName());
          ri->initFromReaction(pModel->getReactions()[i]->getKey());
          data->setRi(ri);
          mpReaData.append(data);
        }
    }

  mType = REACTIONREMOVEALL;
  setEntityType("Reaction");
  this->setText(removeAllReactionRowsText());
}
开发者ID:PriKalra，项目名称:COPASI，代码行数:29，代码来源:RemoveAllReactionRowsCommand.cpp

示例10: setFilter

void CCopasiSelectionDialog::setFilter(const CQSimpleSelectionTree::ObjectClasses & classes)
{
  CCopasiDataModel * pDataModel = ListViews::dataModel(this);
  assert(pDataModel != NULL);

  this->mpSelectionWidget->populateTree(pDataModel->getModel(), classes);
}
开发者ID:，项目名称:，代码行数:7，代码来源:

示例11: redo

void insertReactionRowsCommand::redo()
{
  mpReactionDM->insertNewReactionRow(mPosition, mRows, QModelIndex());
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
  assert(pDataModel != NULL);
  CModel * pModel = pDataModel->getModel();
  assert(pModel != NULL);
  mpReaction = pModel->getReactions()[mPosition];
  std::string sName = mpReaction->getObjectName();

  if (mpReactionData != NULL)
    mpReactionData->setName(sName);

  CReactionInterface* ri = new CReactionInterface((*CCopasiRootContainer::getDatamodelList())[0]->getModel());
  ri->initFromReaction(mpReaction);

  if (mpReactionData != NULL)
    mpReactionData->setRi(ri);

  setUndoState(true);
  setAction("Add to list");

  if (mpReactionData != NULL)
    setName(mpReactionData->getName());
  else setName(sName);
}
开发者ID:PriKalra，项目名称:COPASI，代码行数:27，代码来源:insertReactionRowsCommand.cpp

示例12: redo

void InsertCompartmentRowsCommand::redo()
{
  if (firstTime)
    {
      mpCompartmentDM->insertNewCompartmentRow(mPosition, mRows, QModelIndex());
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
      CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
      assert(pDataModel != NULL);
      CModel * pModel = pDataModel->getModel();
      assert(pModel != NULL);

      CCompartment *pCompartment = pModel->getCompartments()[mPosition];
      mpCompartmentData->setName(pCompartment->getObjectName());
      mpCompartmentData->setStatus(pCompartment->getStatus());
      mpCompartmentData->setInitialValue(pCompartment->getInitialValue());
      firstTime = false;
    }
  else
    {
      mpCompartmentDM->addCompartmentRow(mpCompartmentData);
    }

  setUndoState(true);
  setAction("Add to list");
  setName(mpCompartmentData->getName());
}
开发者ID:PriKalra，项目名称:COPASI，代码行数:26，代码来源:InsertCompartmentRowsCommand.cpp

示例13: 

void test000046::test_stoichiometricExpression()
{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  CPPUNIT_ASSERT(pDataModel->importSBMLFromString(MODEL_STRING));
  CModel* pModel = pDataModel->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  CPPUNIT_ASSERT(pModel->getQuantityUnitEnum() == CModel::mMol);
  CPPUNIT_ASSERT(pModel->getVolumeUnitEnum() == CModel::ml);
  CPPUNIT_ASSERT(pModel->getTimeUnitEnum() == CModel::s);
  CPPUNIT_ASSERT(pModel->getCompartments().size() == 1);
  const CCompartment* pCompartment = pModel->getCompartments()[0];
  CPPUNIT_ASSERT(pCompartment != NULL);
  CPPUNIT_ASSERT(pCompartment->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(pModel->getMetabolites().size() == 2);
  CMetab* pA = pModel->getMetabolites()[0];
  CPPUNIT_ASSERT(pA != NULL);
  CPPUNIT_ASSERT(pA->getStatus() == CModelEntity::REACTIONS);
  const CMetab* pB = pModel->getMetabolites()[1];
  CPPUNIT_ASSERT(pB != NULL);
  CPPUNIT_ASSERT(pB->getStatus() == CModelEntity::REACTIONS);
  CPPUNIT_ASSERT(pModel->getModelValues().size() == 1);
  const CModelValue* pModelValue = pModel->getModelValues()[0];
  CPPUNIT_ASSERT(pModelValue != NULL);
  CPPUNIT_ASSERT(pModelValue->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(fabs((pModelValue->getInitialValue() - 3.7) / 3.7) < 1e-3);

  CPPUNIT_ASSERT(pModel->getReactions().size() == 1);
  const CReaction* pReaction1 = pModel->getReactions()[0];
  CPPUNIT_ASSERT(pReaction1 != NULL);
  CPPUNIT_ASSERT(pReaction1->isReversible() == true);
  // check the kinetic law
  const CFunction* pKineticFunction = pReaction1->getFunction();
  CPPUNIT_ASSERT(pKineticFunction != NULL);
  const CMassAction* pMassAction = dynamic_cast<const CMassAction*>(pKineticFunction);
  CPPUNIT_ASSERT(pMassAction != NULL);
  const CChemEq* pChemEq = &pReaction1->getChemEq();
  CPPUNIT_ASSERT(pChemEq != NULL);
  CPPUNIT_ASSERT(pChemEq->getCompartmentNumber() == 1);
  CPPUNIT_ASSERT(pChemEq->getSubstrates().size() == 1);
  const CChemEqElement* pElement = pChemEq->getSubstrates()[0];
  CPPUNIT_ASSERT(pElement != NULL);
  CPPUNIT_ASSERT(fabs((pElement->getMultiplicity() - 1.85) / 1.85) < 1e-3);
  CPPUNIT_ASSERT(pElement->getMetabolite() == pA);
  CPPUNIT_ASSERT(pChemEq->getProducts().size() == 1);
  pElement = pChemEq->getProducts()[0];
  CPPUNIT_ASSERT(pElement != NULL);
  CPPUNIT_ASSERT(fabs((pElement->getMultiplicity() - 3.35) / 3.35) / 3.35 < 1e-3);
  CPPUNIT_ASSERT(pElement->getMetabolite() == pB);
  CPPUNIT_ASSERT(pChemEq->getModifiers().size() == 0);
  //CPPUNIT_ASSERT(CCopasiMessage::size() == 5);
  CCopasiMessage message = CCopasiMessage::getLastMessage();
  CPPUNIT_ASSERT(message.getType() == CCopasiMessage::WARNING);
  std::string s = message.getText();
  CPPUNIT_ASSERT(!s.empty());
  CPPUNIT_ASSERT(s.find(std::string("One or more stoichiometric expressions were evaluated and converted to constants values.")) != std::string::npos);
  // the other four messages are libSBML unit warnings I don't care about right
  // now.
}
开发者ID:ShuoLearner，项目名称:COPASI，代码行数:58，代码来源:test000046.cpp

示例14: 

void test000047::test_delay()
{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  CPPUNIT_ASSERT(pDataModel->importSBMLFromString(MODEL_STRING));
  CModel* pModel = pDataModel->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  CPPUNIT_ASSERT(pModel->getQuantityUnitEnum() == CUnit::mMol);
  CPPUNIT_ASSERT(pModel->getVolumeUnitEnum() == CUnit::ml);
  CPPUNIT_ASSERT(pModel->getTimeUnitEnum() == CUnit::s);
  CPPUNIT_ASSERT(pModel->getCompartments().size() == 1);
  const CCompartment* pCompartment = pModel->getCompartments()[0];
  CPPUNIT_ASSERT(pCompartment != NULL);
  CPPUNIT_ASSERT(pCompartment->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(pModel->getMetabolites().size() == 2);
  const CMetab* pB = pModel->getMetabolites()[1];
  CPPUNIT_ASSERT(pB != NULL);
  CPPUNIT_ASSERT(pB->getStatus() == CModelEntity::FIXED);
  CMetab* pA = pModel->getMetabolites()[0];
  CPPUNIT_ASSERT(pA != NULL);
  CPPUNIT_ASSERT(pA->getStatus() == CModelEntity::ASSIGNMENT);
  const CExpression* pExpr = pA->getExpressionPtr();
  CPPUNIT_ASSERT(pExpr != NULL);
  const CEvaluationNode* pNode = pExpr->getRoot();
  CPPUNIT_ASSERT(pNode != NULL);
  const CEvaluationNodeDelay* pDelayNode = dynamic_cast<const CEvaluationNodeDelay*>(pNode);
  CPPUNIT_ASSERT(pDelayNode != NULL);
  const CEvaluationNodeObject* pObjectNode = dynamic_cast<const CEvaluationNodeObject*>(pDelayNode->getChild());
  CPPUNIT_ASSERT(pObjectNode != NULL);
  CCopasiObjectName objectCN = pObjectNode->getObjectCN();
  CPPUNIT_ASSERT(!objectCN.empty());
  std::vector<CCopasiContainer*> listOfContainers;
  listOfContainers.push_back(pModel);
  const CCopasiObject* pObject = pCOPASIDATAMODEL->ObjectFromName(listOfContainers, objectCN);
  CPPUNIT_ASSERT(pObject != NULL);
  CPPUNIT_ASSERT(pObject->isReference() == true);
  CPPUNIT_ASSERT(pObject->getObjectName() == std::string("Concentration"));
  CPPUNIT_ASSERT(pObject->getObjectParent() == pB);
  const CEvaluationNodeNumber* pNumberNode = dynamic_cast<const CEvaluationNodeNumber*>(pObjectNode->getSibling());
  CPPUNIT_ASSERT(pNumberNode != NULL);
  CPPUNIT_ASSERT(((CEvaluationNodeNumber::SubType)CEvaluationNode::subType(pNumberNode->getType())) == CEvaluationNodeNumber::DOUBLE);
  CPPUNIT_ASSERT(fabs((pNumberNode->getValue() - 0.5) / 0.5) < 1e-3);

  CPPUNIT_ASSERT(pNumberNode->getSibling() == NULL);

  CPPUNIT_ASSERT(pModel->getModelValues().size() == 1);
  const CModelValue* pModelValue = pModel->getModelValues()[0];
  CPPUNIT_ASSERT(pModelValue != NULL);
  CPPUNIT_ASSERT(pModelValue->getStatus() == CModelEntity::FIXED);
  CPPUNIT_ASSERT(pModel->getReactions().size() == 0);
  //CPPUNIT_ASSERT(CCopasiMessage::size() == 2);
  CCopasiMessage message = CCopasiMessage::getLastMessage();
  CPPUNIT_ASSERT(message.getType() == CCopasiMessage::WARNING);
  std::string s = message.getText();
  CPPUNIT_ASSERT(!s.empty());
  CPPUNIT_ASSERT(s.find(std::string("COPASI does not support time delays. Calculations on this model will most likely lead to unusable results.")) != std::string::npos);
  // right now, we don't care about the last message since it is a units
  // warning from libSBML
}
开发者ID:PriKalra，项目名称:COPASI，代码行数:58，代码来源:test000047.cpp

示例15: assert

void CQEventWidget1::deleteEvent()
{

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];

  CModel * pModel = pDataModel->getModel();

  if (pModel == NULL)
    return;

  pDataModel->getModel()->removeEvent(mKey);

  mpEvent = NULL;

  protectedNotify(ListViews::EVENT, ListViews::DELETE, mKey);
  mpListView->switchToOtherWidget(116, "");
}
开发者ID:PriKalra，项目名称:COPASI，代码行数:18，代码来源:CQEventWidget1.cpp


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