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C++ SBML_formulaToString函数代码示例

本文整理汇总了C++中SBML_formulaToString函数的典型用法代码示例。如果您正苦于以下问题：C++ SBML_formulaToString函数的具体用法？C++ SBML_formulaToString怎么用？C++ SBML_formulaToString使用的例子？那么, 这里精选的函数代码示例或许可以为您提供帮助。


在下文中一共展示了SBML_formulaToString函数的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。

示例1: START_TEST

END_TEST

START_TEST (test_FormulaFormatter_multiAnd)
{
  char           *s;
  ASTNode_t      *n  = ASTNode_create();
  ASTNode_t      *c  = ASTNode_create();

  ASTNode_setType(n, AST_LOGICAL_AND);
  s = SBML_formulaToString(n);
  fail_unless( !strcmp(s, "and()"), NULL );
  safe_free(s);

  ASTNode_setName(c, "x");
  ASTNode_addChild(n, c);
  s = SBML_formulaToString(n);
  fail_unless( !strcmp(s, "and(x)"), NULL );
  safe_free(s);

  c = ASTNode_create();
  ASTNode_setName(c, "y");
  ASTNode_addChild(n, c);
  s = SBML_formulaToString(n);
  fail_unless( !strcmp(s, "and(x, y)"), NULL );
  safe_free(s);

  c = ASTNode_create();
  ASTNode_setName(c, "z");
  ASTNode_addChild(n, c);
  s = SBML_formulaToString(n);
  fail_unless( !strcmp(s, "and(x, y, z)"), NULL );
  safe_free(s);

  ASTNode_free(n);
}
开发者ID:sn248，项目名称:Rcppsbml，代码行数:35，代码来源:TestFormulaFormatter.c

示例2: printEventMath

void
printEventMath (unsigned int n, Event_t *e)
{
  char         *formula;
  unsigned int i;


  if ( Event_isSetDelay(e) )
  {
    const Delay_t *delay = Event_getDelay(e);

    formula = SBML_formulaToString( Delay_getMath(delay) );
    printf("Event %d delay: %s\n", n, formula);
    free(formula);
  }

  if ( Event_isSetTrigger(e) )
  {
    const Trigger_t *trigger = Event_getTrigger(e);

    formula = SBML_formulaToString( Trigger_getMath(trigger) );
    printf("Event %d trigger: %s\n", n, formula);
    free(formula);
  }

  for (i = 0; i < Event_getNumEventAssignments(e); ++i)
  {
    printEventAssignmentMath(i + 1, Event_getEventAssignment(e, i));
  }

  printf("\n");
}
开发者ID:0u812，项目名称:roadrunner-backup，代码行数:32，代码来源:printMath.c

示例3: START_TEST

END_TEST

START_TEST (test_FormulaFormatter_multiPlusTimes)
{
  StringBuffer_t *sb = StringBuffer_create(42);
  char           *s  = StringBuffer_getBuffer(sb);
  ASTNode_t      *n  = ASTNode_create();
  ASTNode_t      *c  = ASTNode_create();

  ASTNode_setType(n, AST_PLUS);
  ASTNode_setName(c, "x");
  ASTNode_addChild(n, c);
  c = ASTNode_create();
  ASTNode_setName(c, "y");
  ASTNode_addChild(n, c);
  c = ASTNode_create();
  ASTNode_setName(c, "z");
  ASTNode_addChild(n, c);
  s = SBML_formulaToString(n);

  fail_unless( !strcmp(s, "x + y + z"), NULL );

  ASTNode_setType(n, AST_TIMES); 
  s = SBML_formulaToString(n);
  fail_unless( !strcmp(s, "x * y * z"), NULL );

  safe_free(s);
  ASTNode_free(n);
}
开发者ID:TotteKarlsson，项目名称:roadrunner，代码行数:29，代码来源:TestFormulaFormatter.c

示例4: main

int main(void)
{
    int i;
    char *formula;
    variableIndex_t *vi = NULL;

    odeModel_t *model =
      ODEModel_createFromFile("basic-model1-forward-l2.xml");


    /* Get some information from constructed odeModel */
    printf("\n\n");
    printf("ODE Model Statistics:\n");
    printf("Number of ODEs:               %d\n",
	   ODEModel_getNeq(model));
    printf("Number of Assignments:        %d\n",
	   ODEModel_getNumAssignments(model));
    printf("Number of Constants:          %d\n",
	   ODEModel_getNumConstants(model));
    printf("                            ____\n");
    printf("Total number of values:       %d\n",
	   ODEModel_getNumValues(model));
    
    printf("\n");
    printf("ODEs:\n");
    for ( i=0; i<ODEModel_getNeq(model); i++ ){
      vi = ODEModel_getOdeVariableIndex(model, i);
      formula = SBML_formulaToString(ODEModel_getOde(model, vi));
      printf("d[%s]/dt = %s \n", ODEModel_getVariableName(model, vi), formula);
      free(formula);
      VariableIndex_free(vi);
    }
    printf("Assigned Variables:\n");
    for ( i=0; i<ODEModel_getNumAssignments(model); i++ ){
      vi = ODEModel_getAssignedVariableIndex(model, i);
      formula = SBML_formulaToString(ODEModel_getOde(model, vi));
      printf("%s = %s \n", ODEModel_getVariableName(model, vi), formula);
      free(formula);
      VariableIndex_free(vi);
    }
    printf("Constants:\n");
    for ( i=0; i<ODEModel_getNumConstants(model); i++ ){
      vi = ODEModel_getConstantIndex(model, i);
      printf("%s\n", ODEModel_getVariableName(model, vi));
      VariableIndex_free(vi);
    }
    printf("\n\n");

    
    ODEModel_free(model);
    return 1;
}
开发者ID:igemsoftware，项目名称:USTC-Software_2011，代码行数:52，代码来源:printODEModel.c

示例5: printJacobian

void printJacobian(odeModel_t *om, FILE *f)
{    
  int i, j;
  if ( om == NULL ) {
    fprintf(stderr, "No odeModel available.\n");
    return;
  }

  if ( om->jacob == NULL ) {
    fprintf(stderr, "Jacobian Matrix has not been constructed.\n");
    return;
  }

  fprintf(f, "\n");
  fprintf(f, "# Jacobian Matrix:\n");
  for ( i=0; i<om->neq; i++ ) {
    fprintf(f, "# %s: \n", om->names[i]);
    for ( j=0; j<om->neq; j++ ) {
      fprintf(f, "  (d[%s]/dt)/d[%s] = %s;\n", 
	     om->names[i], om->names[j], 
	     SBML_formulaToString(om->jacob[i][j]));
    }
  }
  fprintf(f, "\n");
  fprintf(stderr, "Use option -j to avoid printing the"
	  " jacobian matrix expressions.\n");
  return;
}
开发者ID:igemsoftware，项目名称:USTC-Software_2011，代码行数:28，代码来源:printModel.c

示例6: START_TEST

END_TEST


/**
 * setMathFromFormula() is no longer necessary.  LibSBML now keeps formula
 * strings and math ASTs synchronized automatically.  This (now modified)
 * test is kept around to demonstrate the behavioral change.
 */
START_TEST (test_KineticLaw_setMathFromFormula)
{
  const char *initial_formula = "k3 / k2";
  char* formula;


  fail_unless( !KineticLaw_isSetMath   (kl) );
  fail_unless( !KineticLaw_isSetFormula(kl) );


  KineticLaw_setFormula(kl, initial_formula);
  fail_unless( KineticLaw_isSetMath   (kl) );
  fail_unless( KineticLaw_isSetFormula(kl) );

  formula = SBML_formulaToString( KineticLaw_getMath(kl) );

  fail_unless( !strcmp(formula, initial_formula) );

  safe_free(formula);
}
开发者ID:sys-bio，项目名称:libroadrunner-deps，代码行数:28，代码来源:TestKineticLaw.c

示例7: START_TEST

END_TEST


START_TEST (test_AssignmentRule_createWithFormula)
{
  const ASTNode_t *math;
  char *formula;

  Rule_t *ar = Rule_createAssignment(2, 4);
  Rule_setVariable(ar, "s");
  Rule_setFormula(ar, "1 + 1");


  fail_unless( SBase_getTypeCode  ((SBase_t *) ar) == SBML_ASSIGNMENT_RULE );
  fail_unless( SBase_getMetaId    ((SBase_t *) ar) == NULL );
  fail_unless( !strcmp(Rule_getVariable(ar), "s") );

  math = Rule_getMath((Rule_t *) ar);
  fail_unless(math != NULL);

  formula = SBML_formulaToString(math);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "1 + 1") );

  fail_unless( !strcmp(Rule_getFormula((Rule_t *) ar), formula) );

  Rule_free(ar);
  safe_free(formula);
}
开发者ID:0u812，项目名称:roadrunner-backup，代码行数:29，代码来源:TestAssignmentRule.c

示例8: START_TEST

END_TEST


START_TEST (test_Rule_setMath1)
{
  ASTNode_t *math = ASTNode_createWithType(AST_TIMES);
  ASTNode_t *a = ASTNode_create();
  ASTNode_t *b = ASTNode_create();
  ASTNode_setName(a, "a");
  ASTNode_setName(b, "b");
  ASTNode_addChild(math, a);
  ASTNode_addChild(math, b);
  char *formula;
  const ASTNode_t *math1;

  int i = Rule_setMath(R, math);

  fail_unless( i == LIBSBML_OPERATION_SUCCESS);
  fail_unless( Rule_isSetMath(R)   );

  math1 = Rule_getMath(R);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "a * b") );

  ASTNode_free(math);
}
开发者ID:0u812，项目名称:libsbml.js.frozen，代码行数:29，代码来源:TestRule_newSetters.c

示例9: START_TEST

END_TEST


START_TEST (test_SpeciesReference_setStoichiometryMath)
{
  const ASTNode_t *math = SBML_parseFormula("k3 / k2");

  StoichiometryMath_t *stoich = StoichiometryMath_create(2, 4);
  StoichiometryMath_setMath(stoich, math);
  const StoichiometryMath_t * math1;
  char * formula;


  SpeciesReference_setStoichiometryMath(SR, stoich);

  math1 = SpeciesReference_getStoichiometryMath(SR);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(StoichiometryMath_getMath(math1));
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "k3 / k2") );

  fail_unless( SpeciesReference_isSetStoichiometryMath(SR) );

  safe_free(formula);

}
开发者ID:0u812，项目名称:libsbml.js.frozen，代码行数:27，代码来源:TestSpeciesReference.c

示例10: START_TEST

END_TEST


START_TEST (test_AlgebraicRule_createWithFormula)
{
  const ASTNode_t *math;
  char *formula;

  AlgebraicRule_t *ar = AlgebraicRule_create(2, 4);
  AlgebraicRule_setFormula(ar, "1 + 1");


  fail_unless( SBase_getTypeCode  ((SBase_t *) ar) == SBML_ALGEBRAIC_RULE );
  fail_unless( SBase_getMetaId    ((SBase_t *) ar) == NULL );

  math = AlgebraicRule_getMath(ar);
  fail_unless(math != NULL);

  formula = SBML_formulaToString(math);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "1 + 1") );

  fail_unless( !strcmp(AlgebraicRule_getFormula(ar), formula) );

  AlgebraicRule_free(ar);
  safe_free(formula);
}
开发者ID:kirichoi，项目名称:roadrunner，代码行数:27，代码来源:TestAlgebraicRule.c

示例11: main

int
main (int argc, char *argv[]){
  int i, j;
  char *model;
  double time;
  double printstep;
  /* libSBML types */
  SBMLDocument_t *d;
  SBMLReader_t *sr;
  Model_t *m;
  Reaction_t *r;
  KineticLaw_t *kl;
  ASTNode_t *nary;
  ASTNode_t *diff;
  /* SOSlib types */
  SBMLResults_t *results;
  timeCourse_t *tc;
  cvodeSettings_t *set;

  /* parsing command-line arguments */
  if (argc < 4 ) {
    fprintf(stderr,
	    "usage %s sbml-model-file simulation-time time-steps\n",
            argv[0]);
    exit(EXIT_FAILURE);
  }
  model = argv[1];
  time = atof(argv[2]);
  printstep = atoi(argv[3]); 

  /* parsing the SBML model with libSBML */
  sr = SBMLReader_create();
  d = SBMLReader_readSBML(sr, model);
  SBMLReader_free(sr);

  m = SBMLDocument_getModel(d);

  r = Model_getReaction(m,0);
  kl = Reaction_getKineticLaw(r);
  nary = KineticLaw_getMath(kl);
  printf("N-ary formula: %s\n", SBML_formulaToString(nary));
  diff = differentiateAST(nary, "Product");
  printf("N-ary diff: %s\n", SBML_formulaToString(diff));
  ASTNode_free(diff);

  return (EXIT_SUCCESS);  
}
开发者ID:igemsoftware，项目名称:USTC-Software_2011，代码行数:47，代码来源:testNaryOperator.c

示例12: START_TEST

END_TEST


START_TEST (test_FunctionDefinition_setMath)
{
  ASTNode_t *math = SBML_parseFormula("lambda(x, x^3)");

  const ASTNode_t * math1;
  char * formula;

  FunctionDefinition_setMath(FD, math);

  math1 = FunctionDefinition_getMath(FD);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "lambda(x, x^3)") );
  fail_unless( FunctionDefinition_getMath(FD) != math );
  fail_unless( FunctionDefinition_isSetMath(FD) );
  fail_unless( FunctionDefinition_isSetBody(FD) );

  /* Reflexive case (pathological) */
  FunctionDefinition_setMath(FD, (ASTNode_t *) FunctionDefinition_getMath(FD));
  math1 = FunctionDefinition_getMath(FD);
  fail_unless( math1 != NULL );

  safe_free(formula);
  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "lambda(x, x^3)") );
  fail_unless( FunctionDefinition_getMath(FD) != math );

  FunctionDefinition_setMath(FD, NULL);
  fail_unless( !FunctionDefinition_isSetMath(FD) );
  fail_unless( !FunctionDefinition_isSetBody(FD) );

  if (FunctionDefinition_getMath(FD) != NULL)
  {
    fail("FunctionDefinition_setMath(FD, NULL) did not clear ASTNode.");
  }

  ASTNode_free(math);
  safe_free(formula);
}
开发者ID:sn248，项目名称:Rcppsbml，代码行数:45，代码来源:TestFunctionDefinition.c

示例13: START_TEST

END_TEST


START_TEST (test_EventAssignment_setMath)
{
  ASTNode_t *math = SBML_parseFormula("2 * k");
  char *formula;
  const ASTNode_t *math1;

  EventAssignment_setMath(EA, math);

  math1 = EventAssignment_getMath(EA);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "2 * k") );
  safe_free(formula);

  fail_unless( EventAssignment_getMath(EA) != math);
  fail_unless( EventAssignment_isSetMath(EA) );

  /* Reflexive case (pathological) */
  EventAssignment_setMath(EA, (ASTNode_t *) EventAssignment_getMath(EA));

  math1 = EventAssignment_getMath(EA);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "2 * k") );
  fail_unless( EventAssignment_getMath(EA) != math );
  safe_free(formula);

  EventAssignment_setMath(EA, NULL);
  fail_unless( !EventAssignment_isSetMath(EA) );

  if (EventAssignment_getMath(EA) != NULL)
  {
    fail("EventAssignment_setMath(EA, NULL) did not clear ASTNode.");
  }

  ASTNode_free(math);
}
开发者ID:copasi，项目名称:copasi-dependencies，代码行数:44，代码来源:TestEventAssignment.c

示例14: START_TEST

END_TEST


START_TEST (test_Priority_setMath)
{
  ASTNode_t *math = SBML_parseFormula("lambda(x, x^3)");

  const ASTNode_t * math1;
  char * formula;

  Priority_setMath(P, math);

  math1 = Priority_getMath(P);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "lambda(x, x^3)") );
  fail_unless( Priority_getMath(P) != math );
  fail_unless( Priority_isSetMath(P) );
  safe_free(formula);

  /* Reflexive case (pathological) */
  Priority_setMath(P, (ASTNode_t *) Priority_getMath(P));
  math1 = Priority_getMath(P);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "lambda(x, x^3)") );
  safe_free(formula);

  Priority_setMath(P, NULL);
  fail_unless( !Priority_isSetMath(P) );

  if (Priority_getMath(P) != NULL)
  {
    fail("Priority_setMath(P, NULL) did not clear ASTNode.");
  }
  ASTNode_free(math);
}
开发者ID:kirichoi，项目名称:roadrunner，代码行数:41，代码来源:TestPriority.c

示例15: START_TEST

END_TEST


START_TEST (test_StoichiometryMath_setMath)
{
  ASTNode_t *math = SBML_parseFormula("lambda(x, x^3)");

  const ASTNode_t * math1;
  char * formula;

  StoichiometryMath_setMath(D, math);

  math1 = StoichiometryMath_getMath(D);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "lambda(x, x^3)") );
  fail_unless( StoichiometryMath_getMath(D) != math );
  fail_unless( StoichiometryMath_isSetMath(D) );
  safe_free(formula);

  /* Reflexive case (pathological) */
  StoichiometryMath_setMath(D, (ASTNode_t *) StoichiometryMath_getMath(D));
  math1 = StoichiometryMath_getMath(D);
  fail_unless( math1 != NULL );

  formula = SBML_formulaToString(math1);
  fail_unless( formula != NULL );
  fail_unless( !strcmp(formula, "lambda(x, x^3)") );
  safe_free(formula);

  StoichiometryMath_setMath(D, NULL);
  fail_unless( !StoichiometryMath_isSetMath(D) );

  if (StoichiometryMath_getMath(D) != NULL)
  {
    fail("StoichiometryMath_setMath(D, NULL) did not clear ASTNode.");
  }
  ASTNode_free(math);
}
开发者ID:sn248，项目名称:Rcppsbml，代码行数:41，代码来源:TestStoichiometryMath.c


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