Python obspy.read_inventory方法代碼示例

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_process_synt():
    staxmlfile = os.path.join(DATA_DIR, "stationxml", "IU.KBL.syn.xml")
    inv = obspy.read_inventory(staxmlfile)

    st = testsyn.copy()
    event = obspy.readEvents(testquakeml)[0]
    origin = event.preferred_origin() or event.origins[0]
    event_lat = origin.latitude
    event_lon = origin.longitude
    event_time = origin.time

    pre_filt = [1/90., 1/60., 1/27.0, 1/22.5]
    t1 = event_time
    t2 = event_time + 6000.0
    st_new = proc.process_stream(
        st, remove_response_flag=False, inventory=inv,
        filter_flag=True, pre_filt=pre_filt,
        starttime=t1, endtime=t2, resample_flag=True,
        sampling_rate=2.0, taper_type="hann",
        taper_percentage=0.05, rotate_flag=True,
        event_latitude=event_lat,
        event_longitude=event_lon)
    bmfile = os.path.join(DATA_DIR, "proc", "IU.KBL.syn.proc.mseed")
    st_compare = obspy.read(bmfile)
    assert compare_stream_kernel(st_new, st_compare) 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_process_adjoint_2():
    st, meta = prepare_real_adj_data()
    inv = obspy.read_inventory()
    event = obspy.read_events()[0]

    adjs = pa.convert_stream_to_adjs(st, meta)
    starttime = adjs[0].starttime - 20
    delta = adjs[0].dt / 2.0
    npts = 40 + 2 * len(adjs[0].adjoint_source)
    new_adj = pa.process_adjoint(
        adjs, interp_flag=True, interp_starttime=starttime,
        interp_delta=delta, interp_npts=npts, sum_over_comp_flag=True,
        weight_flag=False, filter_flag=True,
        pre_filt=[0.02, 0.025, 0.059, 0.073],
        taper_percentage=0.05, taper_type="hann",
        add_missing_comp_flag=True, rotate_flag=True,
        inventory=inv, event=event
    )
    assert len(new_adj) == 3 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_window_on_trace():
    obs_tr = read(obsfile).select(channel="*R")[0]
    syn_tr = read(synfile).select(channel="*R")[0]

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)

    cat = readEvents(quakeml)
    inv = read_inventory(staxml)

    windows = win.window_on_trace(obs_tr, syn_tr, config, station=inv,
                                  event=cat, _verbose=False,
                                  figure_mode=False)

    assert len(windows) == 5

    winfile_bm = os.path.join(DATA_DIR, "window",
                              "IU.KBL..BHR.window.json")
    with open(winfile_bm) as fh:
        windows_json = json.load(fh)
    for _win, _win_json_bm in zip(windows, windows_json):
        _win_bm = Window._load_from_json_content(_win_json_bm)
        assert _win == _win_bm 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_window_on_trace_user_levels():
    obs_tr = read(obsfile)[0]
    syn_tr = read(synfile)[0]

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)

    cat = readEvents(quakeml)
    inv = read_inventory(staxml)
    user_module = "pytomo3d.window.tests.user_module_example"

    windows = win.window_on_trace(obs_tr, syn_tr, config, station=inv,
                                  event=cat, user_module=user_module,
                                  _verbose=False,
                                  figure_mode=False)
    assert len(windows) == 4 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_window_on_trace_with_none_user_levels():
    obs_tr = read(obsfile).select(channel="*R")[0]
    syn_tr = read(synfile).select(channel="*R")[0]

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)

    cat = readEvents(quakeml)
    inv = read_inventory(staxml)

    windows = win.window_on_trace(obs_tr, syn_tr, config, station=inv,
                                  event=cat, user_module="None",
                                  _verbose=False, figure_mode=False)

    winfile_bm = os.path.join(DATA_DIR, "window",
                              "IU.KBL..BHR.window.json")
    with open(winfile_bm) as fh:
        windows_json = json.load(fh)
    for _win, _win_json_bm in zip(windows, windows_json):
        _win_bm = Window._load_from_json_content(_win_json_bm)
        assert _win == _win_bm 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_window_on_stream():
    obs_tr = read(obsfile)
    syn_tr = read(synfile)

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)
    config_dict = {"Z": config, "R": config, "T": config}

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)

    cat = readEvents(quakeml)
    inv = read_inventory(staxml)

    windows = win.window_on_stream(obs_tr, syn_tr, config_dict, station=inv,
                                   event=cat, _verbose=False,
                                   figure_mode=False)

    assert len(windows) == 3
    nwins = dict((_w, len(windows[_w])) for _w in windows)
    assert nwins == {"IU.KBL..BHR": 5, "IU.KBL..BHZ": 2, "IU.KBL..BHT": 4} 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_window_on_stream_user_levels():
    obs_tr = read(obsfile)
    syn_tr = read(synfile)

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)
    config_dict = {"Z": config, "R": config, "T": config}

    config_file = os.path.join(DATA_DIR, "window", "27_60.BHZ.config.yaml")
    config = wio.load_window_config_yaml(config_file)

    cat = readEvents(quakeml)
    inv = read_inventory(staxml)

    _mod = "pytomo3d.window.tests.user_module_example"
    user_modules = {"BHZ": _mod, "BHR": _mod, "BHT": _mod}

    windows = win.window_on_stream(obs_tr, syn_tr, config_dict, station=inv,
                                   event=cat, user_modules=user_modules,
                                   _verbose=False,
                                   figure_mode=False)

    assert len(windows) == 3
    nwins = dict((_w, len(windows[_w])) for _w in windows)
    assert nwins == {"IU.KBL..BHR": 5, "IU.KBL..BHZ": 2, "IU.KBL..BHT": 4} 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_information_in_other_namespaces_stationxml_is_retained(tmpdir):
    filename = os.path.join(data_dir, "multi_station_epoch.xml")
    asdf_filename = os.path.join(tmpdir.strpath, "test.h5")

    inv = obspy.read_inventory(filename)
    # We want to retain this.
    assert inv[0][0].extra == {
        "something": {"namespace": "https://example.com", "value": "test"}
    }
    assert inv[0][1].extra == {}
    assert inv[0][2].extra == {}

    # Write and close.
    with ASDFDataSet(asdf_filename) as ds:
        ds.add_stationxml(filename)

    # Open again and test.
    with ASDFDataSet(asdf_filename) as ds:
        inv2 = ds.waveforms.XX_YYY.StationXML
    assert inv2[0][0].extra == {
        "something": {"namespace": "https://example.com", "value": "test"}
    }
    assert inv2[0][1].extra == {}
    assert inv2[0][2].extra == {} 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_isolate_and_merge_with_station_level_information():
    """
    Tests isolate and merge with a station level station files which used to
    cause an error.
    """
    inv = obspy.read_inventory()
    for net in inv:
        for sta in net:
            sta.channels = []

    inv = isolate_and_merge_station(inv, network_id="GR", station_id="FUR")
    assert len(inv.networks) == 1
    assert len(inv[0].stations) == 1

    assert inv[0].code == "GR"
    assert inv[0][0].code == "FUR" 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def safe_load_staxml(staxmlfile):
    try:
        inv = read_inventory(staxmlfile)
    except Exception as exp:
        raise("Failed to parse staxml file(%s) due to: %s"
              % (staxmlfile, exp))
    return inv 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def test_rotate_adj_stream():
    # rotate from NEZ to RTZ and rotate back
    st = SAMPLE_STREAM.copy()
    inv = obspy.read_inventory()
    st_rtz = st.copy()
    rotate_stream(st_rtz, 0, 0, inv, mode="NE->RT", sanity_check=True)
    st_nez = st_rtz.copy()
    pa.rotate_adj_stream(st_nez, 0, 0, inv)
    for tr1, tr2 in zip(st, st_nez):
        assert_trace_equal(tr1, tr2) 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def prepare_real_adj_data():
    st = SAMPLE_STREAM.copy()
    inv = obspy.read_inventory()
    event = obspy.read_events()[0]
    elat = event.preferred_origin().latitude
    elon = event.preferred_origin().longitude

    rotate_stream(st, elat, elon, inv)
    new_z = st.select(component="Z")[0].copy()
    new_z.stats.location = "00"
    st.append(new_z)

    meta = {
        "BW.RJOB..EHZ": {
            "adj_src_type": "waveform_misfit", "misfit": 1.0,
            "min_period": 17.0, "max_period": 40.0},
        "BW.RJOB..EHR": {
            "adj_src_type": "waveform_misfit", "misfit": 2.0,
            "min_period": 17.0, "max_period": 40.0},
        "BW.RJOB..EHT": {
            "adj_src_type": "waveform_misfit", "misfit": 3.0,
            "min_period": 17.0, "max_period": 40.0},
        "BW.RJOB.00.EHZ": {
            "adj_src_type": "waveform_misfit", "misfit": 4.0,
            "min_period": 17.0, "max_period": 40.0}}
    return st, meta 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def get_windows():
        obs_tr = read(obsfile).select(channel="*R")[0]
        syn_tr = read(synfile).select(channel="*R")[0]

        config_file = os.path.join(
            DATA_DIR, "window", "27_60.BHZ.config.yaml")
        config = wio.load_window_config_yaml(config_file)

        cat = readEvents(quakeml)

        inv = read_inventory(staxml)
        windows = win.window_on_trace(obs_tr, syn_tr, config, station=inv,
                                      event=cat, _verbose=False,
                                      figure_mode=False)
        return windows 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def get_inventory():
    print('Read inventory file')
    try:
        return read_inventory(invname, 'STATIONXML')
    except Exception:
        pass
    print('Create inventory file...')
    client = FSDNClient('ORFEUS')
    inv = client.get_stations(**inventory_kwargs)
    for net in inv:
        for sta in net[:]:
            if sta.code not in stations:
                net.stations.remove(sta)
    inv.write(invname, 'STATIONXML')
    return inv 

# 需要導入模塊: import obspy [as 別名]
# 或者: from obspy import read_inventory [as 別名]
def _get_station(self, station_name):
        """
        Retrieves the specified StationXML as an ObsPy Inventory object. For
        internal use only, use the dot accessors for external access.

        :param station_name: A string with network id and station id,
            e.g. ``"IU.ANMO"``
        :type station_name: str
        """
        if (
            station_name not in self.__file["Waveforms"]
            or "StationXML" not in self.__file["Waveforms"][station_name]
        ):
            return None

        data = self.__file["Waveforms"][station_name]["StationXML"]

        with io.BytesIO(_read_string_array(data)) as buf:
            try:
                inv = obspy.read_inventory(buf, format="stationxml")
            except lxml.etree.XMLSyntaxError:
                raise ValueError(
                    "Invalid XML file stored in the StationXML group for "
                    "station %s (HDF5 path '/Waveforms/%s/StationXML'). Talk "
                    "to the person/program that created the file!"
                    % (station_name, station_name)
                )

        return inv