Python numpy.intersect1d方法代碼示例

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def main_sequence_filter(self):
        """Removes stars from Target List which are not main sequence
        
        """
        
        # indices from Target List to keep
        i1 = np.where((self.BV < 0.74) & (self.MV < 6*self.BV + 1.8))[0]
        i2 = np.where((self.BV >= 0.74) & (self.BV < 1.37) & \
                (self.MV < 4.3*self.BV + 3.05))[0]
        i3 = np.where((self.BV >= 1.37) & (self.MV < 18*self.BV - 15.7))[0]
        i4 = np.where((self.BV < 0.87) & (self.MV > -8*(self.BV - 1.35)**2 + 7.01))[0]
        i5 = np.where((self.BV >= 0.87) & (self.BV < 1.45) & \
                (self.MV < 5*self.BV + 0.81))[0]
        i6 = np.where((self.BV >= 1.45) & (self.MV > 18*self.BV - 18.04))[0]
        ia = np.append(np.append(i1, i2), i3)
        ib = np.append(np.append(i4, i5), i6)
        i = np.intersect1d(np.unique(ia), np.unique(ib))
        self.revise_lists(i) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def voc2012_split(dataset_dir='data/datasets/VOCdevkit/VOC2012/', split_ratios=[0.7, 0.2, 0.1]):

    images_dir = os.path.join(dataset_dir, 'JPEGImages/')
    labels_dir = os.path.join(dataset_dir, 'SegmentationClass/')

    image_filenames = [filename.split('.')[0] for filename in os.listdir(images_dir) if os.path.isfile(os.path.join(images_dir, filename)) and filename.endswith('.jpg')]
    label_filenames = [filename.split('.')[0] for filename in os.listdir(labels_dir) if os.path.isfile(os.path.join(labels_dir, filename)) and filename.endswith('.png')]

    dataset_filenames = np.intersect1d(image_filenames, label_filenames)

    train_dataset_filename = os.path.join(dataset_dir, 'train.txt')
    valid_dataset_filename = os.path.join(dataset_dir, 'val.txt')
    test_dataset_filename = os.path.join(dataset_dir, 'test.txt')

    try:
        train_val_test_split(
            dataset_filenames=dataset_filenames,
            split_ratios=split_ratios,
            train_dataset_filename=train_dataset_filename,
            valid_dataset_filename=valid_dataset_filename,
            test_dataset_filename=test_dataset_filename)
    except BaseException:
        raise Exception('Dataset split failed.')

    return train_dataset_filename, valid_dataset_filename, test_dataset_filename 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def nonin_osc_strength(self):
    from scipy.sparse import spmatrix 
    """ Computes the non-interacting oscillator strengths and energies """

    x,y,z = map(spmatrix.toarray, self.dipole_coo())
    i2d = array((x,y,z))
    n = self.mo_occ.shape[-1]
    
    p = zeros((len(comega)), dtype=np.complex128) # result to accumulate
    
    for s in range(self.nspin):
      o,e,cc = self.mo_occ[0,s],self.mo_energy[0,s],self.mo_coeff[0,s,:,:,0]
      oo1,ee1 = np.subtract.outer(o,o).reshape(n*n), np.subtract.outer(e,e).reshape(n*n)
      idx = unravel_index( np.intersect1d(where(oo1<0.0), where(ee1<eemax)), (n,n))
      ivrt,iocc = array(list(set(idx[0]))), array(list(set(idx[1])))
      voi2d = einsum('nia,ma->nmi', einsum('iab,nb->nia', i2d, cc[ivrt]), cc[iocc])
      t2osc = 2.0/3.0*einsum('voi,voi->vo', voi2d, voi2d)
      t2w =  np.subtract.outer(e[ivrt],e[iocc])
      t2o = -np.subtract.outer(o[ivrt],o[iocc])

      for iw,w in enumerate(comega):
        p[iw] += 0.5*(t2osc*((t2o/(w-t2w))-(t2o/(w+t2w)))).sum()      
    return p 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def _ecg_rsa_cycles(signals):
    """Extract respiratory cycles."""
    inspiration_onsets = np.intersect1d(
        np.where(signals["RSP_Phase"] == 1)[0], np.where(signals["RSP_Phase_Completion"] == 0)[0], assume_unique=True
    )

    expiration_onsets = np.intersect1d(
        np.where(signals["RSP_Phase"] == 0)[0], np.where(signals["RSP_Phase_Completion"] == 0)[0], assume_unique=True
    )

    cycles_length = np.diff(inspiration_onsets)

    return {
        "RSP_Inspiration_Onsets": inspiration_onsets,
        "RSP_Expiration_Onsets": expiration_onsets,
        "RSP_Cycles_Length": cycles_length,
    } 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def get_partition_from_splits(self, splits):
        num_splits = len(splits)
        splits_per_partition = np.int(np.ceil(np.log2(self.num_classes)))

        num_failed = 0
        while True:
            which_splits = np.random.choice(num_splits, splits_per_partition, replace=False)
            splits_for_this_partition = [splits[i] for i in which_splits]
            partition = defaultdict(list)
            num_big_enough_classes = 0
            for i_class, above_or_belows in enumerate(product([0, 1], repeat=splits_per_partition)):
                zones = [splits_for_this_partition[i][above_or_belows[i]] for i in range(splits_per_partition)]
                indices = reduce(np.intersect1d, zones)
                if len(indices) >= self.num_samples_per_class:
                    num_big_enough_classes += 1
                    partition[i_class].extend(indices.tolist())
            if num_big_enough_classes >= self.num_classes:
                break
            else:
                num_failed += 1
        return partition, num_failed 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def compute_miou(coords, preds, targets, weights):
    coords, preds, targets, weights = filter_points(coords, preds, targets, weights)
    seen_classes = np.unique(targets)
    mask = np.zeros(CONF.NUM_CLASSES)
    mask[seen_classes] = 1

    pointmiou = np.zeros(CONF.NUM_CLASSES)
    voxmiou = np.zeros(CONF.NUM_CLASSES)

    uvidx, uvlabel, _ = point_cloud_label_to_surface_voxel_label_fast(coords, np.concatenate((np.expand_dims(targets,1),np.expand_dims(preds,1)),axis=1), res=0.02)
    for l in seen_classes:
        target_label = np.arange(targets.shape[0])[targets==l]
        pred_label = np.arange(preds.shape[0])[preds==l]
        num_intersection_label = np.intersect1d(pred_label, target_label).shape[0]
        num_union_label = np.union1d(pred_label, target_label).shape[0]
        pointmiou[l] = num_intersection_label / (num_union_label + 1e-8)

        target_label_vox = uvidx[(uvlabel[:, 0] == l)]
        pred_label_vox = uvidx[(uvlabel[:, 1] == l)]
        num_intersection_label_vox = np.intersect1d(pred_label_vox, target_label_vox).shape[0]
        num_union_label_vox = np.union1d(pred_label_vox, target_label_vox).shape[0]
        voxmiou[l] = num_intersection_label_vox / (num_union_label_vox + 1e-8)

    return pointmiou, voxmiou, mask 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def find_colors(ref_id, ref_flux, ref_ivar):
    # Find colors
    print("Finding colors")
    a = pyfits.open(DATA_DIR + "/lamost_catalog_colors.fits")
    data = a[1].data
    a.close()
    all_ids = data['LAMOST_ID_1']
    all_ids = np.array([val.strip() for val in all_ids])
    ref_id_col = np.intersect1d(all_ids, ref_id)
    inds = np.array([np.where(all_ids==val)[0][0] for val in ref_id_col])
    all_col, all_col_ivar = get_colors(
            DATA_DIR + "/lamost_catalog_colors.fits")
    col = all_col[:,inds]
    col_ivar = all_col_ivar[:,inds]
    bad_ivar = np.logical_or(np.isnan(col_ivar), col_ivar==np.inf)
    col_ivar[bad_ivar] = 0.0
    bad_flux = np.logical_or(np.isnan(col), col==np.inf)
    col[bad_flux] = 1.0
    col_ivar[bad_flux] = 0.0
    # add them to the wl, flux and ivar arrays
    inds = np.array([np.where(ref_id==val)[0][0] for val in ref_id_col])
    ref_flux_col = np.hstack((ref_flux[inds], col.T))
    ref_ivar_col = np.hstack((ref_ivar[inds], col_ivar.T))
    return ref_id_col, ref_flux_col, ref_ivar_col 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def find_colors(ref_id, ref_flux, ref_ivar):
    # Find colors
    DATA_DIR = "/Users/annaho/Data/LAMOST/Mass_And_Age"
    print("Finding colors")
    a = pyfits.open(DATA_DIR + "/lamost_catalog_colors.fits")
    data = a[1].data
    a.close()
    all_ids = data['LAMOST_ID_1']
    all_ids = np.array([val.strip() for val in all_ids])
    ref_id_col = np.intersect1d(all_ids, ref_id)
    inds = np.array([np.where(all_ids==val)[0][0] for val in ref_id_col])
    all_id, all_col, all_col_ivar = get_colors(
            DATA_DIR + "/lamost_catalog_colors.fits")
    col = all_col[:,inds]
    col_ivar = all_col_ivar[:,inds]
    bad_ivar = np.logical_or(np.isnan(col_ivar), col_ivar==np.inf)
    col_ivar[bad_ivar] = 0.0
    bad_flux = np.logical_or(np.isnan(col), col==np.inf)
    col[bad_flux] = 1.0
    col_ivar[bad_flux] = 0.0
    # add them to the wl, flux and ivar arrays
    inds = np.array([np.where(ref_id==val)[0][0] for val in ref_id_col])
    ref_flux_col = np.hstack((ref_flux[inds], col.T))
    ref_ivar_col = np.hstack((ref_ivar[inds], col_ivar.T))
    return ref_id_col, ref_flux_col, ref_ivar_col 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def filtertraindata(self):
        datapath = get_data_path('coco')
        train_list = tuple(open(datapath + 'annotations/train2014.txt', 'r'))
        val_list = tuple(open(datapath + 'annotations/val2014.txt', 'r'))
        total_list = ['/train2014/'+id_.rstrip() for id_ in train_list] + ['/val2014/'+id_.rstrip() for id_ in val_list]

        annotation_path = os.path.join(datapath, 'seg_mask')
        aug_list = []
        for filename in total_list:
            lbl_path = annotation_path + filename + '.png'
            lbl = Image.open(lbl_path).convert('P')
            lbl = np.array(lbl, dtype=np.int32)
            if np.sum(pascal_map[lbl] != 0) > 1000 and np.intersect1d(np.unique(lbl),pascal_classes).any():
                aug_list.append(filename)

        val_aug_list = random.sample(aug_list, 1500)
        train_aug_list = list(set(aug_list) - set(val_aug_list))
        with open(os.path.join(datapath, 'annotations', 'train_aug.txt'), 'w') as txtfile:
            [txtfile.write(file + '\n') for file in train_aug_list]
        with open(os.path.join(datapath, 'annotations', 'val.txt'), 'w') as txtfile:
            [txtfile.write(file + '\n') for file in val_aug_list] 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def test_shuffle_kfold():
    # Check the indices are shuffled properly
    kf = KFold(3)
    kf2 = KFold(3, shuffle=True, random_state=0)
    kf3 = KFold(3, shuffle=True, random_state=1)

    X = np.ones(300)

    all_folds = np.zeros(300)
    for (tr1, te1), (tr2, te2), (tr3, te3) in zip(
            kf.split(X), kf2.split(X), kf3.split(X)):
        for tr_a, tr_b in combinations((tr1, tr2, tr3), 2):
            # Assert that there is no complete overlap
            assert_not_equal(len(np.intersect1d(tr_a, tr_b)), len(tr1))

        # Set all test indices in successive iterations of kf2 to 1
        all_folds[te2] = 1

    # Check that all indices are returned in the different test folds
    assert_equal(sum(all_folds), 300) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def test_stratified_shuffle_split_overlap_train_test_bug():
    # See https://github.com/scikit-learn/scikit-learn/issues/6121 for
    # the original bug report
    y = [0, 1, 2, 3] * 3 + [4, 5] * 5
    X = np.ones_like(y)

    sss = StratifiedShuffleSplit(n_splits=1,
                                 test_size=0.5, random_state=0)

    train, test = next(sss.split(X=X, y=y))

    # no overlap
    assert_array_equal(np.intersect1d(train, test), [])

    # complete partition
    assert_array_equal(np.union1d(train, test), np.arange(len(y))) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def test_stratified_shuffle_split_multilabel():
    # fix for issue 9037
    for y in [np.array([[0, 1], [1, 0], [1, 0], [0, 1]]),
              np.array([[0, 1], [1, 1], [1, 1], [0, 1]])]:
        X = np.ones_like(y)
        sss = StratifiedShuffleSplit(n_splits=1, test_size=0.5, random_state=0)
        train, test = next(sss.split(X=X, y=y))
        y_train = y[train]
        y_test = y[test]

        # no overlap
        assert_array_equal(np.intersect1d(train, test), [])

        # complete partition
        assert_array_equal(np.union1d(train, test), np.arange(len(y)))

        # correct stratification of entire rows
        # (by design, here y[:, 0] uniquely determines the entire row of y)
        expected_ratio = np.mean(y[:, 0])
        assert_equal(expected_ratio, np.mean(y_train[:, 0]))
        assert_equal(expected_ratio, np.mean(y_test[:, 0])) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def intersect_sim(array_1, array_2):
    """Calculate the simiarity of two arrays
    by using intersection / union
    """
    sim = float(np.intersect1d(array_1, array_2).size) / \
        float(np.union1d(array_1, array_2).size)
    return sim 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def fit_pRF_radius(ctx, retinotopy=Ellipsis, mask=None, weight=Ellipsis, slope_only=False):
    '''
    fit_pRF_radius(ctx) fits a line, m*eccen + b, to the pRF radius and yields the tuple (m, b).

    The following options may be given:
      * retinotopy (default: Ellipsis) specifies the prefix for the retinotopy (passed to
        retinotopy_data() to find the retinotopic dataset).
      * mask (default: None) specifies the mask over which to perform the calculation. This is
        passed to the to_mask() function. In the case that mask is a set or frozenset, then it is
        treated as a conjunction (intersection) of masks.
      * weight (default: None) specifies that a weight should be used; if this is True or Ellipsis,
        will use the variance_explained if it is part of the retinotopy dataset; if this is False or
        None, uses no weight; otherwise, this must be a weight property or property name.
      * slope_only (default: False) may be set to True to instead fit radius = m*eccen and return
        only m.
    '''
    rdat = retinotopy_data(ctx, retinotopy)
    if 'radius' not in rdat: raise ValueError('No pRF radius found in dataset %s' % retinotopy)
    rad = rdat['radius']
    (ang,ecc) = as_retinotopy(rdat, 'visual')
    if isinstance(mask, (set, frozenset)):
        mask = reduce(np.intersect1d, [ctx.mask(m, indices=True) for m in mask])
    else: mask = ctx.mask(mask, indices=True)
    # get a weight if provided:
    if weight in [False, None]: wgt = np.ones(rad.shape)
    elif weight in [True, Ellipsis]:
        if 'variance_explained' in rdat: wgt = rdat['variance_explained']
        else: wgt = np.ones(rad.shape)
    else: wgt = ctx.property(weight)
    # get the relevant eccen and radius values
    (ecc,rad,wgt) = [x[mask] for x in (ecc,rad,wgt)]
    # fit a line...
    if slope_only:
        ecc = np.reshape(ecc * wgt, (len(ecc), 1))
        rad = np.reshape(rad * wgt, (len(rad), 1))
        return np.linalg.lstsq(ecc, rad)[0]
    else:
        return tuple(np.polyfit(ecc, rad, 1, w=wgt)) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import intersect1d [as 別名]
def choose_next_target(self, old_sInd, sInds, slewTimes, intTimes):
        """Choose next target at random
        
        Args:
            old_sInd (integer):
                Index of the previous target star
            sInds (integer array):
                Indices of available targets
            slewTimes (astropy quantity array):
                slew times to all stars (must be indexed by sInds)
            intTimes (astropy Quantity array):
                Integration times for detection in units of day
        
        Returns:
            sInd (integer):
                Index of next target star
        
        """
        
        TL = self.TargetList

        # cast sInds to array
        sInds = np.array(sInds, ndmin=1, copy=False)
        occ_sInds = np.where(np.in1d(TL.Name, self.occHIPs))[0]
        n_sInds = np.intersect1d(sInds, occ_sInds)
        
        # pick one
        if len(n_sInds) == 0:
            sInd = np.random.choice(sInds)
        else:
            sInd = np.random.choice(n_sInds)
        
        return sInd, slewTimes[sInd]