Python numpy.indices方法代碼示例

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def get_to_common_frame(obs, frame_wcs):
    """ Matches an `Observation`'s coordinates to a `Frame`'s wcs

    Parameters
    ----------
    obs: `Observation`
        An observation instance for which we want to know the coordinates in the frame of `frame_wcs`
    frame_wcs: `WCS`
        a wcs that gives the mapping between pixel coordinates and sky coordinates for a given frame
    Returns
    -------
        coord_obs_frame: `tuple`
            Coordinates of the observations's pixels in the frame of the provided wcs
    """
    c, ny, nx = obs.frame.shape
    #Positions of the observation's pixels
    y, x = np.indices((ny, nx))
    y = y.flatten()
    x = x.flatten()

    # Positions of Observation's pixel in the frame of the wcs
    Y,X = convert_coordinates((y,x), obs.frame.wcs, frame_wcs)

    coord = (Y,X)
    return coord 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def coefficients_to_polynomial(coefficients, variables):
  """Converts array of lists of coefficients to a polynomial."""
  coefficients = np.asarray(coefficients)
  shape = coefficients.shape

  indices = list(zip(*np.indices(shape).reshape([len(shape), -1])))
  monomials = []
  for power in indices:
    coeffs = coefficients.item(power)
    if (number.is_integer_or_rational(coeffs)
        or isinstance(coeffs, sympy.Symbol)):
      coeffs = [coeffs]
    elif not isinstance(coeffs, list):
      raise ValueError('Unrecognized coeffs={} type={}'
                       .format(coeffs, type(coeffs)))
    for coeff in coeffs:
      monomials.append(monomial(coeff, variables, power))
  random.shuffle(monomials)
  return ops.Add(*monomials) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def trim(coefficients):
  """Makes non-zero entry in the final slice along each axis."""
  coefficients = np.asarray(coefficients)
  non_zero = np.not_equal(coefficients, 0)
  ndim = coefficients.ndim

  for axis in range(ndim):
    length = coefficients.shape[axis]
    axis_complement = list(range(0, axis)) + list(range(axis + 1, ndim))
    non_zero_along_axis = np.any(non_zero, axis=tuple(axis_complement))

    slice_to = 0
    for index in range(length - 1, -1, -1):
      if non_zero_along_axis[index]:
        slice_to = index + 1
        break

    if slice_to < length:
      coefficients = coefficients.take(axis=axis, indices=list(range(slice_to)))

  return coefficients 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def position(self, lat_idx):
        """return 'space' position of one or multiple sites.

        Parameters
        ----------
        lat_idx : ndarray, ``(... , dim+1)``
            Lattice indices.

        Returns
        -------
        pos : ndarray, ``(..., dim)``
            The position of the lattice sites specified by `lat_idx` in real-space.
        """
        idx = self._asvalid_latidx(lat_idx)
        res = np.take(self.unit_cell_positions, idx[..., -1], axis=0)
        for i in range(self.dim):
            res += idx[..., i, np.newaxis] * self.basis[i]
        return res 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def mps2lat_idx(self, i):
        """Translate MPS index `i` to lattice indices ``(x_0, ..., x_{dim-1}, u)``.

        Parameters
        ----------
        i : int | array_like of int
            MPS index/indices.

        Returns
        -------
        lat_idx : array
            First dimensions like `i`, last dimension has len `dim`+1 and contains the lattice
            indices ``(x_0, ..., x_{dim-1}, u)`` corresponding to `i`.
            For `i` accross the MPS unit cell and "infinite" `bc_MPS`, we shift `x_0` accordingly.
        """
        if self.bc_MPS == 'infinite':
            # allow `i` outsit of MPS unit cell for bc_MPS infinite
            i0 = i
            i = np.mod(i, self.N_sites)
            if np.any(i0 != i):
                lat = self.order[i].copy()
                lat[..., 0] += (i0 - i) * self.N_rings // self.N_sites
                # N_sites_per_ring might not be set for IrregularLattice
                return lat
        return self.order[i].copy() 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def mps_lat_idx_fix_u(self, u=None):
        """Similar as :meth:`mps_idx_fix_u`, but return also the corresponding lattice indices.

        Parameters
        ----------
        u : None | int
            Selects a site of the unit cell. ``None`` (default) means all sites.

        Returns
        -------
        mps_idx : array
            MPS indices `i` for which ``self.site(i) is self.unit_cell[u]``.
        lat_idx : 2D array
            The row `j` contains the lattice index (without `u`) corresponding to ``mps_idx[j]``.
        """
        mps_idx = self.mps_idx_fix_u(u)
        return mps_idx, self.order[mps_idx, :-1] 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def idrop_labels(self, old_labels=None):
        """Remove leg labels from self; in place.

        Parameters
        ----------
        old_labels : list of str|int
            The leg labels/indices for which the label should be removed.
            By default (None), remove all labels.
        """
        if old_labels is None:
            self._labels = [None] * self.rank
            return self
        old_inds = self.get_leg_indices(old_labels)
        labels = self._labels[:]
        for i in old_inds:
            labels[i] = None
        self._labels = labels
        return self

    # string output =========================================================== 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def as_completely_blocked(self):
        """Gives a version of self which is completely blocked by charges.

        Functions like :func:`svd` or :func:`eigh` require a complete blocking by charges.
        This can be achieved by encapsulating each leg which is not completely blocked into a
        :class:`LegPipe` (containing only that single leg). The LegPipe will then contain all
        necessary information to revert the blocking.

        Returns
        -------
        encapsulated_axes : list of int
            The leg indices which have been encapsulated into Pipes.
        blocked_self : :class:`Array`
            Self (if ``len(encapsulated_axes) = 0``) or a copy of self,
            which is completely blocked.
        """
        enc_axes = [a for a, l in enumerate(self.legs) if not l.is_blocked()]
        if len(enc_axes) == 0:
            return enc_axes, self
        qconj = [self.legs[a].qconj for a in enc_axes]
        return enc_axes, self.combine_legs([[a] for a in enc_axes], qconj=qconj) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def _iter_common_sorted(a, b):
    """Yield indices ``i, j`` for which ``a[i] == b[j]``.

    *Assumes* that ``a[i_start:i_stop]`` and ``b[j_start:j_stop]`` are strictly ascending.
    Given that, it is equivalent to (but faster than)
    ``[(i, j) for j, i in itertools.product(range(len(a)), range(len(b)) if a[i] == b[j]]``
    """
    l_a = len(a)
    l_b = len(b)
    i, j = 0, 0
    res = []
    while i < l_a and j < l_b:
        if a[i] < b[j]:
            i += 1
        elif b[j] < a[i]:
            j += 1
        else:
            res.append((i, j))
            i += 1
            j += 1
    return res 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def bunch(self):
        """Return a copy with bunched self.charges: form blocks for contiguous equal charges.

        Returns
        -------
        idx : 1D array
            ``idx[:-1]`` are the indices of the old qind which are kept,
            ``idx[-1] = old_block_number``.
        cp : :class:`LegCharge`
            A new LegCharge with the same charges at given indices of the leg,
            but (possibly) shorter ``self.charges`` and ``self.slices``.

        See also
        --------
        sort : sorts by charges, thus enforcing complete blocking in combination with bunch.
        """
        if self.bunched:  # nothing to do
            return np.arange(self.block_number + 1, dtype=np.intp), self
        cp = self.copy()
        idx = _find_row_differences(self.charges)
        cp._set_charges(cp.charges[idx[:-1]])  # avanced indexing -> copy
        cp._set_slices(cp.slices[idx])
        cp.bunched = True
        return idx, cp 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def _find_row_differences(qflat):
    """Return indices where the rows of the 2D array `qflat` change.

    Parameters
    ----------
    qflat : 2D array
        The rows of this array are compared.

    Returns
    -------
    diffs: 1D array
        The indices where rows change, including the first and last. Equivalent to:
        ``[0]+[i for i in range(1, len(qflat)) if np.any(qflat[i-1] != qflat[i])] + [len(qflat)]``
    """
    if qflat.shape[1] == 0:
        return np.array([0, qflat.shape[0]], dtype=np.intp)
    diff = np.ones(qflat.shape[0] + 1, dtype=np.bool_)
    diff[1:-1] = np.any(qflat[1:] != qflat[:-1], axis=1)
    return np.nonzero(diff)[0]  # get the indices of True-values 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def collate_fn_base(
        self, attributes_and_types: Dict[str, type], batch: Union[List[int], np.ndarray]
    ) -> Tuple[torch.Tensor, ...]:
        """Given indices and attributes to batch, returns a full batch of ``Torch.Tensor``
        """
        indices = np.asarray(batch)
        data_numpy = [
            getattr(self, attr)[indices].astype(dtype)
            if isinstance(getattr(self, attr), np.ndarray)
            else getattr(self, attr)[indices].toarray().astype(dtype)
            for attr, dtype in attributes_and_types.items()
        ]

        data_torch = tuple(torch.from_numpy(d) for d in data_numpy)
        return data_torch

    #############################
    #                           #
    #      GENE FILTERING       #
    #                           #
    ############################# 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def subsample_cells(self, size: Union[int, float] = 1.0):
        """Wrapper around ``update_cells`` allowing for automatic (based on sum of counts) subsampling.

        If size is a:

            * (0,1) float: subsample 100*``size`` % of the cells
            * int: subsample ``size`` cells
        """
        new_n_cells = (
            int(size * self.nb_cells)
            if not isinstance(size, (int, np.integer))
            else size
        )
        indices = np.argsort(np.squeeze(np.asarray(self.X.sum(axis=1))))[::-1][
            :new_n_cells
        ]
        self.update_cells(indices) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def filter_cell_types(self, cell_types: Union[List[str], List[int], np.ndarray]):
        """Performs in-place filtering of cells by keeping cell types in ``cell_types``.

        Parameters
        ----------
        cell_types
            numpy array of type np.int (indices) or np.str (cell-types names)
        """
        cell_types = np.asarray(cell_types)
        if isinstance(cell_types[0], str):
            labels_to_keep = self.cell_types_to_labels(cell_types)
        elif isinstance(cell_types[0], (int, np.integer)):
            labels_to_keep = cell_types
        else:
            raise ValueError(
                "Wrong dtype for cell_types. Should be either str or int (labels)."
            )

        subset_cells = self._get_cells_filter_mask_by_attribute(
            attribute_name="labels",
            attribute_values_to_keep=labels_to_keep,
            return_data=False,
        )

        self.update_cells(subset_cells) 

# 需要導入模塊: import numpy [as 別名]
# 或者: from numpy import indices [as 別名]
def _indices(self, slice_index=None):
        # get a int-array containing all indices in the first axis.
        if slice_index is None:
            slice_index = self._current_slice_
        #try:
        indices = np.indices(self._realshape_, dtype=int)
        indices = indices[(slice(None),)+slice_index]
        indices = np.rollaxis(indices, 0, indices.ndim).reshape(-1,self._realndim_)
            #print indices_
            #if not np.all(indices==indices__):
            #    import ipdb; ipdb.set_trace()
        #except:
        #    indices = np.indices(self._realshape_, dtype=int)
        #    indices = indices[(slice(None),)+slice_index]
        #    indices = np.rollaxis(indices, 0, indices.ndim)
        return indices