Python layers.MaxPooling3D方法代碼示例

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def get_liveness_model():

    model = Sequential()
    model.add(Conv3D(32, kernel_size=(3, 3, 3),
                    activation='relu',
                    input_shape=(24,100,100,1)))
    model.add(Conv3D(64, (3, 3, 3), activation='relu'))
    model.add(MaxPooling3D(pool_size=(2, 2, 2)))
    model.add(Conv3D(64, (3, 3, 3), activation='relu'))
    model.add(MaxPooling3D(pool_size=(2, 2, 2)))
    model.add(Conv3D(64, (3, 3, 3), activation='relu'))
    model.add(MaxPooling3D(pool_size=(2, 2, 2)))
    model.add(Dropout(0.25))
    model.add(Flatten())
    model.add(Dense(128, activation='relu'))
    model.add(Dropout(0.5))
    model.add(Dense(2, activation='softmax'))

    return model 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def timeception_layers(tensor, n_layers=4, n_groups=8, is_dilated=True):
    input_shape = K.int_shape(tensor)
    assert len(input_shape) == 5

    expansion_factor = 1.25
    _, n_timesteps, side_dim, side_dim, n_channels_in = input_shape

    # how many layers of timeception
    for i in range(n_layers):
        layer_num = i + 1

        # get details about grouping
        n_channels_per_branch, n_channels_out = __get_n_channels_per_branch(n_groups, expansion_factor, n_channels_in)

        # temporal conv per group
        tensor = __grouped_convolutions(tensor, n_groups, n_channels_per_branch, is_dilated, layer_num)

        # downsample over time
        tensor = MaxPooling3D(pool_size=(2, 1, 1), name='maxpool_tc%d' % (layer_num))(tensor)
        n_channels_in = n_channels_out

    return tensor 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def __define_timeception_layers(self, n_channels_in, n_layers, n_groups, expansion_factor, is_dilated):
        """
        Define layers inside the timeception layers.
        """

        # how many layers of timeception
        for i in range(n_layers):
            layer_num = i + 1

            # get details about grouping
            n_channels_per_branch, n_channels_out = self.__get_n_channels_per_branch(n_groups, expansion_factor, n_channels_in)

            # temporal conv per group
            self.__define_grouped_convolutions(n_channels_in, n_groups, n_channels_per_branch, is_dilated, layer_num)

            # downsample over time
            layer_name = 'maxpool_tc%d' % (layer_num)
            layer = MaxPooling3D(pool_size=(2, 1, 1), name=layer_name)
            setattr(self, layer_name, layer)

            n_channels_in = n_channels_out 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def get_model_compiled(shapeinput, num_class, w_decay=0, lr=1e-3):
    clf = Sequential()
    clf.add(Conv3D(32, kernel_size=(5, 5, 24), input_shape=shapeinput))
    clf.add(BatchNormalization())
    clf.add(Activation('relu'))
    clf.add(Conv3D(64, (5, 5, 16)))
    clf.add(BatchNormalization())
    clf.add(Activation('relu'))
    clf.add(MaxPooling3D(pool_size=(2, 2, 1)))
    clf.add(Flatten())
    clf.add(Dense(300, kernel_regularizer=regularizers.l2(w_decay)))
    clf.add(BatchNormalization())
    clf.add(Activation('relu'))
    clf.add(Dense(num_class, activation='softmax'))
    clf.compile(loss=categorical_crossentropy, optimizer=Adam(lr=lr), metrics=['accuracy'])
    return clf 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def dsrff3D(image_size, num_labels):
    num_channels=1
    inputs = Input(shape = (image_size, image_size, image_size, num_channels))

    # modified VGG19 architecture
    bn_axis = 3
    m = Convolution3D(32, 3, 3, 3, activation='relu', border_mode='same')(inputs)    
    m = Convolution3D(32, 3, 3, 3, activation='relu', border_mode='same')(m)
    m = MaxPooling3D(pool_size=(2, 2, 2), strides=(2, 2, 2))(m)

    m = Convolution3D(64, 3, 3, 3, activation='relu', border_mode='same')(m)    
    m = Convolution3D(64, 3, 3, 3, activation='relu', border_mode='same')(m)
    m = MaxPooling3D(pool_size=(2, 2, 2), strides=(2, 2, 2))(m)

    m = Flatten(name='flatten')(m)
    m = Dense(512, activation='relu', name='fc1')(m)
    m = Dense(512, activation='relu', name='fc2')(m)
    m = Dense(num_labels, activation='softmax')(m)

    mod = KM.Model(inputs=inputs, outputs=m)

    return mod 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def __temporal_convolutional_block(tensor, n_channels_per_branch, kernel_sizes, dilation_rates, layer_num, group_num):
    """
    Define 5 branches of convolutions that operate of channels of each group.
    """

    # branch 1: dimension reduction only and no temporal conv
    t_1 = Conv3D(n_channels_per_branch, kernel_size=(1, 1, 1), padding='same', name='conv_b1_g%d_tc%d' % (group_num, layer_num))(tensor)
    t_1 = BatchNormalization(name='bn_b1_g%d_tc%d' % (group_num, layer_num))(t_1)

    # branch 2: dimension reduction followed by depth-wise temp conv (kernel-size 3)
    t_2 = Conv3D(n_channels_per_branch, kernel_size=(1, 1, 1), padding='same', name='conv_b2_g%d_tc%d' % (group_num, layer_num))(tensor)
    t_2 = DepthwiseConv1DLayer(kernel_sizes[0], dilation_rates[0], padding='same', name='convdw_b2_g%d_tc%d' % (group_num, layer_num))(t_2)
    t_2 = BatchNormalization(name='bn_b2_g%d_tc%d' % (group_num, layer_num))(t_2)

    # branch 3: dimension reduction followed by depth-wise temp conv (kernel-size 5)
    t_3 = Conv3D(n_channels_per_branch, kernel_size=(1, 1, 1), padding='same', name='conv_b3_g%d_tc%d' % (group_num, layer_num))(tensor)
    t_3 = DepthwiseConv1DLayer(kernel_sizes[1], dilation_rates[1], padding='same', name='convdw_b3_g%d_tc%d' % (group_num, layer_num))(t_3)
    t_3 = BatchNormalization(name='bn_b3_g%d_tc%d' % (group_num, layer_num))(t_3)

    # branch 4: dimension reduction followed by depth-wise temp conv (kernel-size 7)
    t_4 = Conv3D(n_channels_per_branch, kernel_size=(1, 1, 1), padding='same', name='conv_b4_g%d_tc%d' % (group_num, layer_num))(tensor)
    t_4 = DepthwiseConv1DLayer(kernel_sizes[2], dilation_rates[2], padding='same', name='convdw_b4_g%d_tc%d' % (group_num, layer_num))(t_4)
    t_4 = BatchNormalization(name='bn_b4_g%d_tc%d' % (group_num, layer_num))(t_4)

    # branch 5: dimension reduction followed by temporal max pooling
    t_5 = Conv3D(n_channels_per_branch, kernel_size=(1, 1, 1), padding='same', name='conv_b5_g%d_tc%d' % (group_num, layer_num))(tensor)
    t_5 = MaxPooling3D(pool_size=(2, 1, 1), strides=(1, 1, 1), padding='same', name='maxpool_b5_g%d_tc%d' % (group_num, layer_num))(t_5)
    t_5 = BatchNormalization(name='bn_b5_g%d_tc%d' % (group_num, layer_num))(t_5)

    # concatenate channels of branches
    tensor = Concatenate(axis=4, name='concat_g%d_tc%d' % (group_num, layer_num))([t_1, t_2, t_3, t_4, t_5])

    return tensor 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def contracting_layer(input, neurons):
    conv1 = Conv3D(neurons, (3,3,3), activation='relu', padding='same')(input)
    conv2 = Conv3D(neurons, (3,3,3), activation='relu', padding='same')(conv1)
    conc1 = concatenate([input, conv2], axis=4)
    pool = MaxPooling3D(pool_size=(2, 2, 2))(conc1)
    return pool, conv2

# Create the middle layer between the contracting and expanding layers 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def contracting_layer(input, neurons):
    conv1 = Conv3D(neurons, (3,3,3), activation='relu', padding='same')(input)
    conv2 = Conv3D(neurons, (3,3,3), activation='relu', padding='same')(conv1)
    pool = MaxPooling3D(pool_size=(2, 2, 2))(conv2)
    return pool, conv2

# Create the middle layer between the contracting and expanding layers 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def get_model_compiled(args, inputshape, num_class):
    model = Sequential()
    if args.arch == "CNN1D":
        model.add(Conv1D(20, (24), activation='relu', input_shape=inputshape))
        model.add(MaxPooling1D(pool_size=5))
        model.add(Flatten())
        model.add(Dense(100))
    elif "CNN2D" in args.arch:
        model.add(Conv2D(50, kernel_size=(5, 5), input_shape=inputshape))
        model.add(Activation('relu'))
        model.add(Conv2D(100, (5, 5)))
        model.add(Activation('relu'))
        model.add(MaxPooling2D(pool_size=(2, 2)))
        model.add(Flatten())
        model.add(Dense(100))
    elif args.arch == "CNN3D":
        model.add(Conv3D(32, kernel_size=(5, 5, 24), input_shape=inputshape))
        model.add(BatchNormalization())
        model.add(Activation('relu'))
        model.add(Conv3D(64, (5, 5, 16)))
        model.add(BatchNormalization())
        model.add(Activation('relu'))
        model.add(MaxPooling3D(pool_size=(2, 2, 1)))
        model.add(Flatten())
        model.add(Dense(300))
    if args.arch != "CNN2D": model.add(BatchNormalization())
    model.add(Activation('relu'))
    model.add(Dense(num_class, activation='softmax'))
    model.compile(loss=categorical_crossentropy, optimizer=Adam(args.lr1), metrics=['accuracy']) 
    return model 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def nn_architecture_seg_3d(input_shape, pool_size=(2, 2, 2), n_labels=1, initial_learning_rate=0.00001,
                        depth=3, n_base_filters=16, metrics=dice_coefficient, batch_normalization=True):
    inputs = Input(input_shape)
    current_layer = inputs
    levels = list()

    for layer_depth in range(depth):
        layer1 = create_convolution_block(input_layer=current_layer, n_filters=n_base_filters * (2**layer_depth),
                                          batch_normalization=batch_normalization)
        layer2 = create_convolution_block(input_layer=layer1, n_filters=n_base_filters * (2**layer_depth) * 2,
                                          batch_normalization=batch_normalization)
        if layer_depth < depth - 1:
            current_layer = MaxPooling3D(pool_size=pool_size)(layer2)
            levels.append([layer1, layer2, current_layer])
        else:
            current_layer = layer2
            levels.append([layer1, layer2])

    for layer_depth in range(depth - 2, -1, -1):
        up_convolution = UpSampling3D(size=pool_size)
        concat = concatenate([up_convolution, levels[layer_depth][1]], axis=1)
        current_layer = create_convolution_block(n_filters=levels[layer_depth][1]._keras_shape[1],
                                                 input_layer=concat, batch_normalization=batch_normalization)
        current_layer = create_convolution_block(n_filters=levels[layer_depth][1]._keras_shape[1],
                                                 input_layer=current_layer,
                                                 batch_normalization=batch_normalization)

    final_convolution = Conv3D(n_labels, (1, 1, 1))(current_layer)
    act = Activation('sigmoid')(final_convolution)
    model = Model(inputs=inputs, outputs=act)

    if not isinstance(metrics, list):
        metrics = [metrics]

    model.compile(optimizer=Adam(lr=initial_learning_rate), loss=dice_coefficient_loss, metrics=metrics)
    return model 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def inception3D(image_size, num_labels):
    num_channels=1
    inputs = Input(shape = (image_size, image_size, image_size, num_channels))

    m = Convolution3D(32, 5, 5, 5, subsample=(1, 1, 1), activation='relu', border_mode='valid', input_shape=())(inputs)
    m = MaxPooling3D(pool_size=(2, 2, 2), strides=None, border_mode='same')(m)

    # inception module 0
    branch1x1 = Convolution3D(32, 1, 1, 1, subsample=(1, 1, 1), activation='relu', border_mode='same')(m)
    branch3x3_reduce = Convolution3D(32, 1, 1, 1, subsample=(1, 1, 1), activation='relu', border_mode='same')(m)
    branch3x3 = Convolution3D(64, 3, 3, 3, subsample=(1, 1, 1), activation='relu', border_mode='same')(branch3x3_reduce)
    branch5x5_reduce = Convolution3D(16, 1, 1, 1, subsample=(1, 1, 1), activation='relu', border_mode='same')(m)
    branch5x5 = Convolution3D(32, 5, 5, 5, subsample=(1, 1, 1), activation='relu', border_mode='same')(branch5x5_reduce)
    branch_pool = MaxPooling3D(pool_size=(2, 2, 2), strides=(1, 1, 1), border_mode='same')(m)
    branch_pool_proj = Convolution3D(32, 1, 1, 1, subsample=(1, 1, 1), activation='relu', border_mode='same')(branch_pool)
    #m = merge([branch1x1, branch3x3, branch5x5, branch_pool_proj], mode='concat', concat_axis=-1)
    from keras.layers import concatenate
    m = concatenate([branch1x1, branch3x3, branch5x5, branch_pool_proj],axis=-1)

    m = AveragePooling3D(pool_size=(2, 2, 2), strides=(1, 1, 1), border_mode='valid')(m)
    m = Flatten()(m)
    m = Dropout(0.7)(m)

    # expliciately seperate Dense and Activation layers in order for projecting to structural feature space
    m = Dense(num_labels, activation='linear')(m)
    m = Activation('softmax')(m)

    mod = KM.Model(input=inputs, output=m)

    return mod 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def model_simple_upsampling__reshape(img_shape, class_n=None):

    from keras.layers import Input, Dense, Convolution3D, MaxPooling3D, UpSampling3D, Reshape, Flatten
    from keras.models import Sequential, Model
    from keras.layers.core import Activation
    from aitom.classify.deep.unsupervised.autoencoder.seg_util import conv_block

    NUM_CHANNELS=1
    input_shape = (None, img_shape[0], img_shape[1], img_shape[2], NUM_CHANNELS)

    # use relu activation for hidden layer to guarantee non-negative outputs are passed to the max pooling layer. In such case, as long as the output layer is linear activation, the network can still accomodate negative image intendities, just matter of shift back using the bias term
    input_img = Input(shape=input_shape[1:])
    x = input_img

    x = conv_block(x, 32, 3, 3, 3)
    x = MaxPooling3D((2, 2, 2), border_mode='same')(x)
    x = conv_block(x, 32, 3, 3, 3)
    x = MaxPooling3D((2, 2, 2), border_mode='same')(x)

    x = conv_block(x, 32, 3, 3, 3)

    x = UpSampling3D((2, 2, 2))(x)
    x = conv_block(x, 32, 3, 3, 3)

    x = UpSampling3D((2, 2, 2))(x)
    x = conv_block(x, 32, 3, 3, 3)

    x = Convolution3D(class_n, 1, 1, 1, border_mode='same')(x)
    x = Reshape((N.prod(img_shape), class_n))(x)
    x = Activation('softmax')(x)

    model = Model(input=input_img, output=x)

    print('model layers:')
    for l in model.layers:    print (l.output_shape, l.name)

    return model 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def c3d_model():
    input_shape = (112, 112, 8, 3)
    weight_decay = 0.005
    nb_classes = 101

    inputs = Input(input_shape)
    x = Conv3D(64,(3,3,3),strides=(1,1,1),padding='same',
               activation='relu',kernel_regularizer=l2(weight_decay))(inputs)
    x = MaxPooling3D((2,2,1),strides=(2,2,1),padding='same')(x)

    x = Conv3D(128,(3,3,3),strides=(1,1,1),padding='same',
               activation='relu',kernel_regularizer=l2(weight_decay))(x)
    x = MaxPooling3D((2,2,2),strides=(2,2,2),padding='same')(x)

    x = Conv3D(128,(3,3,3),strides=(1,1,1),padding='same',
               activation='relu',kernel_regularizer=l2(weight_decay))(x)
    x = MaxPooling3D((2,2,2),strides=(2,2,2),padding='same')(x)

    x = Conv3D(256,(3,3,3),strides=(1,1,1),padding='same',
               activation='relu',kernel_regularizer=l2(weight_decay))(x)
    x = MaxPooling3D((2,2,2),strides=(2,2,2),padding='same')(x)

    x = Conv3D(256, (3, 3, 3), strides=(1, 1, 1), padding='same',
               activation='relu',kernel_regularizer=l2(weight_decay))(x)
    x = MaxPooling3D((2, 2, 1), strides=(2, 2, 1), padding='same')(x)

    x = Flatten()(x)
    x = Dense(2048,activation='relu',kernel_regularizer=l2(weight_decay))(x)
    x = Dropout(0.5)(x)
    x = Dense(2048,activation='relu',kernel_regularizer=l2(weight_decay))(x)
    x = Dropout(0.5)(x)
    x = Dense(nb_classes,kernel_regularizer=l2(weight_decay))(x)
    x = Activation('softmax')(x)

    model = Model(inputs, x)
    return model 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def timeception_temporal_convolutions(tensor, n_layers, n_groups, expansion_factor, is_dilated=True):
    input_shape = K.int_shape(tensor)
    assert len(input_shape) == 5

    _, n_timesteps, side_dim, side_dim, n_channels_in = input_shape

    # collapse regions in one dim
    tensor = ReshapeLayer((n_timesteps, side_dim * side_dim, 1, n_channels_in))(tensor)

    for i in range(n_layers):

        n_channels_per_branch, n_channels_out = __get_n_channels_per_branch(n_groups, expansion_factor, n_channels_in)

        # add global pooling as local regions
        tensor = __global_spatial_pooling(tensor)

        # temporal conv (inception-style, shuffled)
        if is_dilated:
            tensor = __timeception_shuffled_depthwise_dilated(tensor, n_groups, n_channels_per_branch)
        else:
            tensor = __timeception_shuffled_depthwise(tensor, n_groups, n_channels_per_branch)

        # downsample over time
        tensor = MaxPooling3D(pool_size=(2, 1, 1))(tensor)
        n_channels_in = n_channels_out

    return tensor 

# 需要導入模塊: from keras import layers [as 別名]
# 或者: from keras.layers import MaxPooling3D [as 別名]
def timeception_temporal_convolutions_parallelized(tensor, n_layers, n_groups, expansion_factor, is_dilated=True):
    input_shape = K.int_shape(tensor)
    assert len(input_shape) == 5

    raise Exception('Sorry, not implemented now')

    _, n_timesteps, side_dim, side_dim, n_channels_in = input_shape

    # collapse regions in one dim
    tensor = ReshapeLayer((n_timesteps, side_dim * side_dim, 1, n_channels_in))(tensor)

    for i in range(n_layers):
        # add global pooling as regions
        tensor = __global_spatial_pooling(tensor)

        # temporal conv (inception-style, shuffled)
        n_channels_per_branch, n_channels_out = __get_n_channels_per_branch(n_groups, expansion_factor, n_channels_in)
        if is_dilated:
            tensor = __timeception_shuffled_depthwise_dilated_parallelized(tensor, n_groups, n_channels_per_branch)
        else:
            tensor = __timeception_shuffled_depthwise_parallelized(tensor, n_groups, n_channels_per_branch)
        tensor = MaxPooling3D(pool_size=(2, 1, 1))(tensor)
        n_channels_in = n_channels_out

    return tensor

# endregion

# region Timeception Block