本文整理匯總了Python中xia2.Handlers.Flags.Flags.get_batch_scale方法的典型用法代碼示例。如果您正苦於以下問題：Python Flags.get_batch_scale方法的具體用法？Python Flags.get_batch_scale怎麽用？Python Flags.get_batch_scale使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類xia2.Handlers.Flags.Flags的用法示例。
在下文中一共展示了Flags.get_batch_scale方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: __init__
# 需要導入模塊: from xia2.Handlers.Flags import Flags [as 別名]
# 或者: from xia2.Handlers.Flags.Flags import get_batch_scale [as 別名]
def __init__(self):
# generic things
CCP4DriverInstance.__class__.__init__(self)
self.set_executable(os.path.join(
os.environ.get('CBIN', ''), 'aimless'))
if not os.path.exists(self.get_executable()):
raise RuntimeError, 'aimless binary not found'
self.start()
self.close_wait()
version = None
for record in self.get_all_output():
if '##' in record and 'AIMLESS' in record:
version = record.split()[5]
if not version:
raise RuntimeError, 'version not found'
Debug.write('Using version: %s' % version)
# FIXME (i) check program exists and (ii) version is known -
# if not then default back in the calling code to using scala.
# recently fixed things...
version_values = map(int, version.split('.'))
if (version_values[1] > 5) or (version_values[1] == 5 and \
version_values[2] > 10):
self._fixed_secondary_lmax = True
else:
self._fixed_secondary_lmax = False
# clear all the header junk
self.reset()
# input and output files
self._scalepack = False
self._chef_unmerged = False
self._unmerged_reflections = None
self._xmlout = None
# scaling parameters
self._resolution = None
self._resolution_by_run = { }
# scales file for recycling
self._scales_file = None
# this defaults to SCALES - and is useful for when we
# want to refine the SD parameters because we can
# recycle the scale factors through the above interface
self._new_scales_file = None
# this flag indicates that the input reflections are already
# scaled and just need merging e.g. from XDS/XSCALE.
self._onlymerge = False
# by default, switch this on
if decay_correction is None:
self._bfactor = True
else:
self._bfactor = decay_correction
# this will often be wanted
self._anomalous = False
# by default switch this on too...
if partiality_correction is None:
self._tails = True
else:
self._tails = partiality_correction
# alternative for this is 'batch' err.. no rotation
if Flags.get_batch_scale():
self._mode = 'batch'
else:
self._mode = 'rotation'
# these are only relevant for 'rotation' mode scaling
self._spacing = 5
if absorption_correction == None:
self._secondary = Flags.get_aimless_secondary()
elif absorption_correction == True:
self._secondary = Flags.get_aimless_secondary()
else:
self._secondary = 0
self._cycles = 100
self._brotation = None
self._bfactor_tie = None
self._surface_tie = None
self._surface_link = True
#.........這裏部分代碼省略.........