Python SequenceCollection.from_fasta_records方法代碼示例

本文整理匯總了Python中skbio.SequenceCollection.from_fasta_records方法的典型用法代碼示例。如果您正苦於以下問題：Python SequenceCollection.from_fasta_records方法的具體用法？Python SequenceCollection.from_fasta_records怎麽用？Python SequenceCollection.from_fasta_records使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類skbio.SequenceCollection的用法示例。

在下文中一共展示了SequenceCollection.from_fasta_records方法的2個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: test_degap

# 需要導入模塊: from skbio import SequenceCollection [as 別名]
# 或者: from skbio.SequenceCollection import from_fasta_records [as 別名]
    def test_degap(self):
        """degap functions as expected
        """
        expected = [(id_, seq.replace(".", "").replace("-", "")) for id_, seq in self.seqs1_t]
        expected = SequenceCollection.from_fasta_records(expected, DNASequence)
        actual = self.a1.degap()
        self.assertEqual(actual, expected)

        expected = [(id_, seq.replace(".", "").replace("-", "")) for id_, seq in self.seqs2_t]
        expected = SequenceCollection.from_fasta_records(expected, RNASequence)
        actual = self.a2.degap()
        self.assertEqual(actual, expected)

開發者ID:cauyrd，項目名稱:scikit-bio，代碼行數:14，代碼來源:test_alignment.py

示例2: test_from_fasta_records

# 需要導入模塊: from skbio import SequenceCollection [as 別名]
# 或者: from skbio.SequenceCollection import from_fasta_records [as 別名]
 def test_from_fasta_records(self):
     """Initialization from list of tuples functions as expected
     """
     SequenceCollection.from_fasta_records(self.seqs1_t, DNASequence)
     SequenceCollection.from_fasta_records(self.seqs2_t, RNASequence)
     SequenceCollection.from_fasta_records(self.seqs3_t, NucleotideSequence)

開發者ID:nbresnick，項目名稱:scikit-bio，代碼行數:8，代碼來源:test_alignment.py

注：本文中的skbio.SequenceCollection.from_fasta_records方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台，相關代碼片段篩選自各路編程大神貢獻的開源項目，源碼版權歸原作者所有，傳播和使用請參考對應項目的License；未經允許，請勿轉載。