Python Transform.to_project方法代碼示例

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def create_folder(cls, name, parent=None, project=None,
                      api=None):
        """Create a new folder
        :param name: Folder name
        :param parent: Parent folder
        :param project: Project to create folder in
        :param api: Api instance
        :return: New folder
        """
        api = api or cls._API

        data = {
            'name': name,
            'type': cls.FOLDER_TYPE
        }

        if not parent and not project:
            raise SbgError('Parent or project must be provided')

        if parent and project:
            raise SbgError(
                'Providing both "parent" and "project" is not allowed'
            )

        if parent:
            data['parent'] = Transform.to_file(file_=parent)

        if project:
            data['project'] = Transform.to_project(project=project)

        response = api.post(url=cls._URL['create_folder'], data=data).json()
        return cls(api=api, **response)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def upload(cls, path, project=None, parent=None, file_name=None,
               overwrite=False, retry=5, timeout=10,
               part_size=PartSize.UPLOAD_MINIMUM_PART_SIZE, wait=True,
               api=None):
        """
        Uploads a file using multipart upload and returns an upload handle
        if the wait parameter is set to False. If wait is set to True it
        will block until the upload is completed.

        :param path: File path on local disc.
        :param project: Project identifier
        :param parent: Parent folder identifier
        :param file_name: Optional file name.
        :param overwrite: If true will overwrite the file on the server.
        :param retry:  Number of retries if error occurs during upload.
        :param timeout:  Timeout for http requests.
        :param part_size:  Part size in bytes.
        :param wait:  If true will wait for upload to complete.
        :param api: Api instance.
        """

        api = api or cls._API
        extra = {'resource': cls.__name__, 'query': {
            'path': path,
            'project': project,
            'file_name': file_name,
            'overwrite': overwrite,
            'retry': retry,
            'timeout': timeout,
            'part_size': part_size,
            'wait': wait,
        }}
        logger.info('Uploading file', extra=extra)

        if not project and not parent:
            raise SbgError('A project or parent identifier is required.')

        if project and parent:
            raise SbgError(
                'Project and parent identifiers are mutually exclusive.'
            )

        if project:
            project = Transform.to_project(project)

        if parent:
            parent = Transform.to_file(parent)

        upload = Upload(
            file_path=path, project=project, parent=parent,
            file_name=file_name, overwrite=overwrite, retry_count=retry,
            timeout=timeout, part_size=part_size, api=api
        )
        if wait:
            upload.start()
            upload.wait()
            return upload
        else:
            return upload

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
 def copy(self, project, name=None):
     """
     Copies the current file.
     :param project: Destination project.
     :param name: Destination file name.
     :return: Copied File object.
     """
     project = Transform.to_project(project)
     data = {
         'project': project
     }
     if name:
         data['name'] = name
     new_file = self._api.post(url=self._URL['copy'].format(id=self.id),
                               data=data).json()
     return File(api=self._api, **new_file)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
 def query(cls, project=None, visibility=None, offset=None, limit=None,
           api=None):
     """
     Query (List) apps.
     :param visibility:
     :param project:
     :param offset: Pagination offset.
     :param limit: Pagination limit.
     :param api: Api instance.
     :return: collection object
     """
     if project:
         project = Transform.to_project(project)
     api = api or cls._API
     return super(App, cls)._query(url=cls._URL['query'], project=project,
                                   visibility=visibility,
                                   offset=offset, limit=limit, api=api)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def copy(self, project, name=None):
        """
        Copies the current app.
        :param project: Destination project.
        :param name: Destination app name.
        :return: Copied App object.
        """

        project = Transform.to_project(project)
        data = {
            'project': project
        }
        if name:
            data['name'] = name

        app = self._api.post(url=self._URL['copy'].format(id=self.id),
                             data=data).json()
        return App(api=self._api, **app)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
 def query(cls, project=None, visibility=None, q=None, id=None, offset=None,
           limit=None, api=None):
     """
     Query (List) apps.
     :param project: Source project.
     :param visibility: private|public for private or public apps.
     :param q: List containing search terms.
     :param id: List contains app ids. Fetch apps with specific ids.
     :param offset: Pagination offset.
     :param limit: Pagination limit.
     :param api: Api instance.
     :return: collection object
     """
     if project:
         project = Transform.to_project(project)
     api = api or cls._API
     return super(App, cls)._query(url=cls._URL['query'], project=project,
                                   visibility=visibility, q=q, id=id,
                                   offset=offset, limit=limit, api=api)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
 def copy(self, project, name=None):
     """
     Copies the current file.
     :param project: Destination project.
     :param name: Destination file name.
     :return: Copied File object.
     """
     project = Transform.to_project(project)
     data = {
         'project': project
     }
     if name:
         data['name'] = name
     extra = {'resource': self.__class__.__name__, 'query': {
         'id': self.id,
         'data': data
     }}
     logger.info('Copying file', extra=extra)
     new_file = self._api.post(url=self._URL['copy'].format(id=self.id),
                               data=data).json()
     return File(api=self._api, **new_file)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def query(cls, project, names=None, metadata=None, origin=None,
              offset=None, limit=None, api=None):
        """
        Query ( List ) projects
        :param project: Project id
        :param names: Name list
        :param metadata: Metadata query dict
        :param origin: Origin query dict
        :param offset: Pagination offset
        :param limit: Pagination limit
        :param api: Api instance.
        :return: Collection object.
        """
        api = api or cls._API

        project = Transform.to_project(project)
        query_params = {}

        if names and isinstance(names, list):
            query_params['name'] = names

        metadata_params = {}
        if metadata and isinstance(metadata, dict):
            for k, v in metadata.items():
                metadata_params['metadata.' + k] = metadata[k]

        query_params.update(metadata_params)

        origin_params = {}
        if origin and isinstance(origin, dict):
            for k, v in origin.items():
                origin_params['origin.' + k] = origin[k]

        query_params.update(origin_params)

        return super(File, cls)._query(api=api, url=cls._URL['query'],
                                       project=project, offset=offset,
                                       limit=limit, **query_params)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def copy(self, project, name=None, strategy=None):
        """
        Copies the current app.
        :param project: Destination project.
        :param name: Destination app name.
        :param strategy: App copy strategy.
        :return: Copied App object.

        :Copy strategies:
        clone         copy all revisions and continue getting updates form the
                      original app (default method when the key is omitted)

        direct        copy only the latest revision and get the updates from
                      this point on

        clone_direct  copy the app like the direct strategy, but keep all
                      revisions

        transient     copy only the latest revision and continue getting
                      updates from the original app
        """
        strategy = strategy or AppCopyStrategy.CLONE

        project = Transform.to_project(project)
        data = {
            'project': project,
            'strategy': strategy
        }
        if name:
            data['name'] = name
        extra = {'resource': self.__class__.__name__, 'query': {
            'id': self.id,
            'data': data
        }}
        logger.info('Copying app', extra=extra)
        app = self._api.post(url=self._URL['copy'].format(id=self.id),
                             data=data).json()
        return App(api=self._api, **app)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def create(cls, name, project, app, batch_input=None, batch_by=None,
               inputs=None,
               description=None, run=False, api=None):

        """
        Creates a task on server.
        :param name: Task name.
        :param project: Project identifier.
        :param app: CWL app identifier.
        :param batch_input: Batch input.
        :param batch_by: Batch criteria.
        :param inputs: Input map.
        :param description: Task description.
        :param run: True if you want to run a task upon creation.
        :param api: Api instance.
        :return: Task object.
        """
        task_data = {}

        project = Transform.to_project(project)
        app = Transform.to_app(app)

        task_inputs = {'inputs': {}}
        for k, v in inputs.items():
            if isinstance(v, File):
                input = {
                    'class': 'File',
                    'path': v.id,
                }
                task_inputs['inputs'][k] = input
            elif isinstance(v, list):
                input_list = []
                for inp in v:
                    if isinstance(inp, File):
                        input = {
                            'class': 'File',
                            'path': inp.id,
                        }
                        if inp.name:
                            input['name'] = inp.name
                        input_list.append(input)

                    else:
                        input_list.append(inp)
                task_inputs['inputs'][k] = input_list
            else:
                task_inputs['inputs'][k] = v

        if batch_input:
            task_data['batch_input'] = batch_input

        if batch_by:
            task_data['batch_by'] = batch_by

        task_meta = {
            'name': name,
            'project': project,
            'app': app,
            'description': description
        }
        task_data.update(task_meta)
        task_data.update(task_inputs)

        params = {'action': 'run'} if run else {}
        api = api if api else cls._API
        created_task = api.post(cls._URL['query'], data=task_data,
                                params=params).json()
        return Task(api=api, **created_task)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
def test_transform_project_invalid_values(project):
    with pytest.raises(SbgError):
        Transform.to_project(project)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
def test_transform_project(project):
    Transform.to_project(project)

# 需要導入模塊: from sevenbridges.meta.transformer import Transform [as 別名]
# 或者: from sevenbridges.meta.transformer.Transform import to_project [as 別名]
    def query(cls, project=None, names=None, metadata=None, origin=None,
              tags=None, offset=None, limit=None, dataset=None, api=None,
              parent=None):
        """
        Query ( List ) files, requires project or dataset
        :param project: Project id
        :param names: Name list
        :param metadata: Metadata query dict
        :param origin: Origin query dict
        :param tags: List of tags to filter on
        :param offset: Pagination offset
        :param limit: Pagination limit
        :param dataset: Dataset id
        :param api: Api instance.
        :param parent: Folder id or File object with type folder
        :return: Collection object.
        """
        api = api or cls._API

        query_params = {}

        if project:
            project = Transform.to_project(project)
            query_params['project'] = project

        if dataset:
            dataset = Transform.to_dataset(dataset)
            query_params['dataset'] = dataset

        if parent:
            query_params['parent'] = Transform.to_file(parent)

        if not (project or dataset or parent):
            raise SbgError('Project, dataset or parent must be provided.')

        if [project, parent, dataset].count(None) < 2:
            raise SbgError(
                'Only one out of project, parent or dataset must be provided.'
            )

        if names is not None and isinstance(names, list):
            if len(names) == 0:
                names.append("")
            query_params['name'] = names

        metadata_params = {}
        if metadata and isinstance(metadata, dict):
            for k, v in metadata.items():
                metadata_params['metadata.' + k] = metadata[k]

        if tags:
            query_params['tag'] = tags

        query_params.update(metadata_params)

        origin_params = {}
        if origin and isinstance(origin, dict):
            for k, v in origin.items():
                origin_params['origin.' + k] = origin[k]

        query_params.update(origin_params)

        return super(File, cls)._query(
            api=api, url=cls._URL['query'], offset=offset,
            limit=limit, fields='_all', **query_params
        )