本文整理匯總了Python中pymodule.PassingData.parameters方法的典型用法代碼示例。如果您正苦於以下問題：Python PassingData.parameters方法的具體用法？Python PassingData.parameters怎麽用？Python PassingData.parameters使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類pymodule.PassingData的用法示例。
在下文中一共展示了PassingData.parameters方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: generate_parameters
# 需要導入模塊: from pymodule import PassingData [as 別名]
# 或者: from pymodule.PassingData import parameters [as 別名]
def generate_parameters(self, parameter_names, parameter_depth=2):
"""
2008-05-19
min_call_probability = self.min_call_probability
2008-05-11
put NA rate into passing parameters as well. too much memory consumption on each computing node
"""
sys.stderr.write("Generating parameter settings ...")
param_d = PassingData()
for parameter_name in parameter_names:
parameter_value = getattr(self, parameter_name)
parameter_value = parameter_value.split(",")
parameter_value = map(float, parameter_value)
setattr(self, parameter_name, parameter_value)
"""
#2008-05-19 commented out. use self.min_call_probability
#figure out call probability from input_fname
import re
call_prob_pattern = re.compile(r'_(\d+)\.csv')
call_prob_p_result = call_prob_pattern.search(self.input_fname)
if call_prob_p_result:
min_call_probability = float(call_prob_p_result.groups()[0])
else:
min_call_probability = -1
"""
min_call_probability = self.min_call_probability
# only 1st 4, last 2 passed to computing node
parameters = []
for max_call_mismatch_rate in getattr(self, parameter_names[0]):
for max_call_NA_rate in getattr(self, parameter_names[1]):
for max_snp_mismatch_rate in getattr(self, parameter_names[2]):
for max_snp_NA_rate in getattr(self, parameter_names[3]):
for npute_window_size in getattr(self, parameter_names[4]):
parameters.append(
[
min_call_probability,
max_call_mismatch_rate,
max_call_NA_rate,
max_snp_mismatch_rate,
max_snp_NA_rate,
npute_window_size,
]
)
param_d.parameters = parameters
param_d.max_snp_NA_rate_ls = self.max_snp_NA_rate_ls
param_d.npute_window_size_ls = self.npute_window_size_ls
sys.stderr.write(" %s parameter settings to process. Done.\n" % len(parameters))
return param_d