本文整理匯總了Python中process.sequence.AlignmentList.missing_genes_per_species方法的典型用法代碼示例。如果您正苦於以下問題：Python AlignmentList.missing_genes_per_species方法的具體用法？Python AlignmentList.missing_genes_per_species怎麽用？Python AlignmentList.missing_genes_per_species使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類process.sequence.AlignmentList的用法示例。
在下文中一共展示了AlignmentList.missing_genes_per_species方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: SeconaryOpsTest
# 需要導入模塊: from process.sequence import AlignmentList [as 別名]
# 或者: from process.sequence.AlignmentList import missing_genes_per_species [as 別名]
#.........這裏部分代碼省略.........
def test_single_aln_missing_data_distribution(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.missing_data_distribution(),
{"exception": "single_alignment"})
def test_single_aln_missing_genes_average(self):
self.aln_obj.update_active_alignments([dna_data_fas[0]])
self.assertEqual(self.aln_obj.missing_genes_average(),
{"exception": "single_alignment"})
def test_no_data(self):
self.aln_obj = AlignmentList([], sql_db=sql_db)
self.assertEqual(self.aln_obj.gene_occupancy(),
{'exception': "empty_data"})
def test_gene_occupancy(self):
self.assertTrue(self.aln_obj.gene_occupancy())
def test_missing_data_distribution(self):
self.assertTrue(self.aln_obj.missing_data_distribution())
def test_missing_data_per_species(self):
self.assertTrue(self.aln_obj.missing_data_per_species())
def test_missing_genes_per_species(self):
self.assertTrue(self.aln_obj.missing_genes_per_species())
def test_missing_genes_average(self):
self.assertTrue(self.aln_obj.missing_genes_average())
def test_average_seqsize_per_species(self):
self.assertTrue(self.aln_obj.average_seqsize_per_species())
def test_average_seqsize(self):
self.assertTrue(self.aln_obj.average_seqsize())
def test_characters_proportion(self):
self.assertTrue(self.aln_obj.characters_proportion())
def test_characters_proportion_per_species(self):
self.assertTrue(self.aln_obj.characters_proportion_per_species())
def test_characters_proportion_gene(self):
self.assertTrue(self.aln_obj.characters_proportion_gene(
join(data_path, "BaseConc1.fas"), 10
))
def test_sequence_similarity(self):
self.assertTrue(self.aln_obj.sequence_similarity())