Python Params.resolution方法代碼示例

# 需要導入模塊: from params import Params [as 別名]
# 或者: from params.Params import resolution [as 別名]
  def test_roi (self):
    """Upload an roi and test it's fields"""

    # Make a skeleton
    makeAnno (p, 9)

    # test the parent
    parent = random.randint (0,65535)
    f = setField(p, 'parent', parent)
    f = getField(p, 'parent')
    assert parent == int(f.content)

    # make a bunch of children ROIs
    q = Params()
    q.token = 'unittest'
    q.resolution = 0
    q.channels = ['unit_anno']

    childids = []
    for i in range(0,4):
      makeAnno ( q, 9)
      f = setField(q, 'parent', p.annoid)
      childids.append(q.annoid)

    # Test children
    f = getField(p, 'children')
    rchildids = f.content.split(',')
    for cid in rchildids:
      assert int(cid) in childids
    assert len(rchildids) == 4

# 需要導入模塊: from params import Params [as 別名]
# 或者: from params.Params import resolution [as 別名]
  def test_node (self):
    """Upload a skeleton node and test it's fields"""

    # Make a node
    makeAnno (p, 7)

    # test the nodetype
    nodetype = random.randint (0,100)
    f = setField(p, 'nodetype', nodetype)
    f = getField(p, 'nodetype')
    assert nodetype == int(f.content)

    # test the skeletonid
    skeletonid = random.randint (0,65535)
    f = setField(p, 'skeletonid', skeletonid)
    f = getField(p, 'skeletonid')
    assert skeletonid == int(f.content)

    # test the pointid
    pointid = random.randint (0,65535)
    f = setField(p, 'pointid', pointid)
    f = getField(p, 'pointid')
    assert pointid == int(f.content)

    # test the parentid
    parentid = random.randint (0,65535)
    f = setField(p, 'parentid', parentid)
    f = getField(p, 'parentid')
    assert parentid == int(f.content)

    # test the radius
    radius = random.random()
    f = setField(p, 'radius', radius)
    f = getField(p, 'radius')
    assert abs(radius - float(f.content)) < 0.001

    # test the location
    location = [random.random(), random.random(), random.random()]
    f = setField(p, 'location', ','.join([str(i) for i in location]))
    f = getField(p, 'location')
    assert ','.join([str(i) for i in location]) == f.content

    # make a bunch of children
    q = Params()
    q.token = 'unittest'
    q.resolution = 0
    q.channels = ['unit_anno']

    childids = []
    for i in range(0,4):
      makeAnno ( q, 9)
      f = setField(q, 'parent', p.annoid)
      childids.append(q.annoid)

    # Test children
    f = getField(p, 'children')
    rchildids = f.content.split(',')
    for cid in rchildids:
      assert int(cid) in childids
    assert len(rchildids) == 4

# 需要導入模塊: from params import Params [as 別名]
# 或者: from params.Params import resolution [as 別名]
  def test_neuron (self):
    """Upload a neuron and test it's fields"""

    # Make a neuron
    makeAnno (p, 5)

    # make a bunch of segments and add to the neuron
    q = Params()
    q.token = 'unittest'
    q.resolution = 0
    q.channels = ['unit_anno']

    segids = []
    for i in range(0,5):
      makeAnno ( q, 4)
      f = setField(q, 'neuron', p.annoid)
      segids.append(q.annoid)

    # Test segments
    f = getField(p, 'segments')
    rsegids = f.content.split(',')
    for sid in rsegids:
      assert int(sid) in segids
    assert len(rsegids) == 5

# 需要導入模塊: from params import Params [as 別名]
# 或者: from params.Params import resolution [as 別名]
import networkx as nx
import time

import makeunitdb
from ocptype import ANNOTATION, UINT32
from params import Params
from ramon import H5AnnotationFile, setField, getField, queryField, makeAnno, createSpecificSynapse
from postmethods import putAnnotation, getAnnotation, getURL, postURL
import kvengine_to_test
import site_to_test
#from ocpgraph import genGraphRAMON
SITE_HOST = site_to_test.site

p = Params()
p.token = 'unittest'
p.resolution = 0
p.channels = ['ANNO1']
p.channel_type = ANNOTATION
p.datatype = UINT32

class Test_GraphGen:

  def setup_class(self):
    """Create the unittest database"""
    makeunitdb.createTestDB(p.token, channel_list=p.channels, public=True, readonly=0)

    cutout1 = "0/2,5/1,3/0,2"
    cutout2 = "0/1,3/4,6/2,5"
    cutout3 = "0/4,6/2,5/5,7"
    cutout4 = "0/6,8/5,9/2,4"

# 需要導入模塊: from params import Params [as 別名]
# 或者: from params.Params import resolution [as 別名]
  def test_skeleton (self):
    """Upload a skeleton and test it's fields"""

    # Make a node
    makeAnno (p, 8)

    # test the nodetype
    skeletontype = random.randint (0,100)
    f = setField(p, 'skeletontype', skeletontype)
    f = getField(p, 'skeletontype')
    assert skeletontype == int(f.content)

    # test the rootnode
    rootnode = random.randint (0,65535)
    f = setField(p, 'rootnode', rootnode)
    f = getField(p, 'rootnode')
    assert rootnode == int(f.content)

    # add some nodes to the skeleton and query them
    # make a bunch of children cnodes
    q = Params()
    q.token = 'unittest'
    q.resolution = 0
    q.channels = ['unit_anno']

    r = Params()
    r.token = 'unittest'
    r.resolution = 0
    r.channels = ['unit_anno']
    # make a root node

    s = Params()
    s.token = 'unittest'
    s.resolution = 0
    s.channels = ['unit_anno']
    # make a root node

    skelids = []

    # make a root node
    makeAnno ( q, 7)
    setField(p, 'rootnode', q.annoid)
    setField(q, 'skeleton', p.annoid)
    skelids.append(q.annoid)

    # Make 2 children and four grandchildren
    for i in range(0,2):
      makeAnno ( r, 7)
      f = setField(r, 'parent', q.annoid)
      f = setField(r, 'skeleton', p.annoid)
      skelids.append(r.annoid)
      for i in range(0,2):
        makeAnno ( s, 7)
        f = setField(s, 'parent', r.annoid)
        f = setField(s, 'skeleton', p.annoid)
        skelids.append(s.annoid)

    # Test skeleton
    f = getField(p, 'nodes')
    rskelids = f.content.split(',')
    for sid in rskelids:
      assert int(sid) in skelids
    assert len(rskelids) == 7

# 需要導入模塊: from params import Params [as 別名]
# 或者: from params.Params import resolution [as 別名]
  def test_test_segment (self):
    """Upload a segment and test it's fields"""

    for i in range(1,10):
      makeAnno (p, 1)

    # Make a segment
    makeAnno (p, 4)

    # make a bunch of synapses
    q = Params()
    q.token = 'unittest'
    q.resolution = 0
    q.channels = ['unit_anno']

    synids = []
    presynids = []
    postsynids = []
    for i in range(0,8):
      makeAnno ( q, 2)
      f = setField(q, 'segments', ','.join([str(p.annoid),str(random.randint(500,1000))]))
#      f = setField(q, 'presegments', ','.join([str(p.annoid),str(random.randint(500,1000))]))
      f = setField(q, 'presegments', ','.join([str(p.annoid)]))
      f = setField(q, 'postsegments', ','.join([str(p.annoid)]))
      synids.append(q.annoid)
      presynids.append(q.annoid)
      postsynids.append(q.annoid)

    # make one more segment
    makeAnno ( q, 2)
    f = setField(q, 'segments', p.annoid)
    synids.append(q.annoid)

    # Test synapses
    f = getField(p, 'synapses')
    rsynids = f.content.split(',')
    for sid in rsynids:
      assert int(sid) in synids
    assert len(rsynids) == 9

    # Test presynapses
    f = getField(p, 'presynapses')
    rsynids = f.content.split(',')
    for sid in rsynids:
      assert int(sid) in presynids
    assert len(rsynids) == 8

    # Test postsynapses
    f = getField(p, 'postsynapses')
    rsynids = f.content.split(',')
    for sid in rsynids:
      assert int(sid) in postsynids
    assert len(rsynids) == 8

    # make a bunch of organelles
    q = Params()
    q.token = 'unittest'
    q.resolution = 0
    q.channels = ['unit_anno']

    orgids = []
    for i in range(0,8):
      makeAnno ( q, 6 )
      f = setField(q, 'segment', p.annoid)
      orgids.append(q.annoid)

    # Test synapses
    f = getField(p, 'organelles')
    rorgids = f.content.split(',')
    for cid in rorgids:
      assert int(cid) in orgids
    assert len(rorgids) == 8