本文整理匯總了Python中oncotator.utils.GenericTsvReader.GenericTsvReader.getInputContentFP方法的典型用法代碼示例。如果您正苦於以下問題：Python GenericTsvReader.getInputContentFP方法的具體用法？Python GenericTsvReader.getInputContentFP怎麽用？Python GenericTsvReader.getInputContentFP使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類oncotator.utils.GenericTsvReader.GenericTsvReader的用法示例。
在下文中一共展示了GenericTsvReader.getInputContentFP方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: sortFile
# 需要導入模塊: from oncotator.utils.GenericTsvReader import GenericTsvReader [as 別名]
# 或者: from oncotator.utils.GenericTsvReader.GenericTsvReader import getInputContentFP [as 別名]
def sortFile(self, filename, func, length=50000):
"""
This method sorts the input file and writes out the sorted file to filename.
:param filename: sorted filename
:param func: function that converts each row of the input file to an unique, sortable key
:param length: maximum number of lines in a partition
"""
reader = GenericTsvReader(filename=self.readfilename, commentPrepend=self.commentPrepend,
delimiter=self.delimiter)
comments = reader.getComments()
fieldnames = reader.getFieldNames()
if fieldnames is None:
fieldnames = []
fieldnameIndexes = collections.OrderedDict()
if fieldnames is not None:
fieldnameIndexes = collections.OrderedDict([(x, i) for (i, x) in enumerate(fieldnames)])
iterable = iter(reader.getInputContentFP())
partitions = self._yieldPartitions(iterable, func, fieldnameIndexes, length)
with open(name=filename, mode='wb', buffering=64 * 1024) as writer:
writer.write(comments)
writer.write(string.join(fieldnames, self.delimiter) + "\n")
writer.writelines(self._merge(partitions)) # generators are allowed as inputs to writelines function