本文整理匯總了Python中oncotator.input.VcfInputMutationCreator.VcfInputMutationCreator.reset方法的典型用法代碼示例。如果您正苦於以下問題：Python VcfInputMutationCreator.reset方法的具體用法？Python VcfInputMutationCreator.reset怎麽用？Python VcfInputMutationCreator.reset使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類oncotator.input.VcfInputMutationCreator.VcfInputMutationCreator的用法示例。
在下文中一共展示了VcfInputMutationCreator.reset方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: testBasicCreationWithExampleVcf
# 需要導入模塊: from oncotator.input.VcfInputMutationCreator import VcfInputMutationCreator [as 別名]
# 或者: from oncotator.input.VcfInputMutationCreator.VcfInputMutationCreator import reset [as 別名]
def testBasicCreationWithExampleVcf(self):
"""
Tests the ability to parse an input VCF file can be parsed without any errors.
"""
inputFilename = os.path.join(*["testdata", "vcf", "example.vcf"])
creator = VcfInputMutationCreator(inputFilename)
muts = creator.createMutations()
# You cannot use len(muts), since muts is a generator.
ctr = 0
for m in muts:
ctr += 1
self.assertTrue(ctr == 27, "Should have seen 27 (# REF alleles x # samples) mutations, but saw: " + str(ctr))
self.assertTrue((m.chr == "21") and (m.start == 1234569), "Last mutation was not correct: " + str(m))
# Reminder: muts is a generator, so it has to be reset
creator.reset()
muts = creator.createMutations()
ctr = 0
for m in muts:
ctr += 1
self.assertTrue(ctr == 27, "Should have seen 27 called mutations, but saw: " + str(ctr))