Python GenericDialog.showDialog方法代碼示例

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def getSettings(img):
    """This function assesses (by returning a boolean value) if the filter can
    be applied to the image passed as argument. Will ask the user for new values
    if current parameters are undefined."""
    global xradius, yradius, zradius
    canProceed = True

    if not img:
        IJ.error("No images open.")
        canProceed = False

    # Get new values if at least one of the parameters is 'null'
    if canProceed and None in (xradius, yradius, zradius):
        gd = GenericDialog("Median Filter")
        gd.addNumericField("X radius:", 2.0, 1)
        gd.addNumericField("Y radius:", 2.0, 1)
        gd.addNumericField("Z radius:", 2.0, 1)
        gd.showDialog()
        if gd.wasCanceled():
            canProceed = False
        else:
            xradius = gd.getNextNumber()
            yradius = gd.getNextNumber()
            zradius = gd.getNextNumber()
 
    return canProceed

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def get_setup():
    ''' Returns the drift correction mode and three image.
    The order of return values is drift detection mode, pre-edge 1, pre-edge 2, post-edge.
    '''
    options = drift.get_options()
    modes = drift.get_modes()
    dialog = GenericDialog('3-window-method setup')
    dialog.addMessage('Select the mode  for drift correction\n' +
                      'and the images to process.')
    dialog.addChoice('Mode:', options, options[0])
    image_ids = WindowManager.getIDList()
    if not image_ids or len(image_ids) < 2:
        return [None]*4
    image_titles = [WindowManager.getImage(id).getTitle() for id in image_ids]
    dialog.addMessage('Post-edge is divided by the pre-edge.')
    dialog.addChoice('Pre-edge 1', image_titles, image_titles[0])
    dialog.addChoice('Pre-edge 2', image_titles, image_titles[1])
    dialog.addChoice('Post-edge', image_titles, image_titles[2])
    dialog.showDialog()
    if dialog.wasCanceled():
        return [None]*4
    mode = modes[dialog.getNextChoiceIndex()]
    img1 = WindowManager.getImage(image_ids[dialog.getNextChoiceIndex()])
    img2 = WindowManager.getImage(image_ids[dialog.getNextChoiceIndex()])
    img3 = WindowManager.getImage(image_ids[dialog.getNextChoiceIndex()])
    return mode, img1, img2, img3

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def getOptions(imp):
  gd = GenericDialog("Correct 3D Drift Options")
  channels = []
  for ch in range(1, imp.getNChannels()+1 ):
    channels.append(str(ch))
  methods = ["phase_correlation","center_of_mass"]
  gd.addChoice("Channel for registration:", channels, channels[0])
  gd.addChoice("Method for registration:", methods, methods[1])
  gd.addNumericField("Background value:", 0, 0)
  gd.addCheckbox("Multi_time_scale computation for enhanced detection of slow drifts?", False)
  gd.addCheckbox("Sub_pixel drift correction (possibly needed for slow drifts)?", False)
  gd.addCheckbox("Edge_enhance images for possibly improved drift detection?", False)
  gd.addCheckbox("Use virtualstack for saving the results to disk to save RAM?", False)
  gd.addCheckbox("Drift correct only data inside ROI?", False)
  gd.addCheckbox("Only compute drift vectors?", False)
  gd.addMessage("If you put a ROI, drift will only be computed in this region;\n the ROI will be moved along with the drift to follow your structure of interest.")
  gd.addSlider("z_min of ROI", 1, imp.getNSlices(), 1)
  gd.addSlider("z_max of ROI", 1, imp.getNSlices(), imp.getNSlices())
  gd.showDialog()
  if gd.wasCanceled():
    return
  channel = gd.getNextChoiceIndex() + 1  # zero-based
  method = gd.getNextChoiceIndex() + 1  # zero-based
  bg_value = gd.getNextNumber()
  multi_time_scale = gd.getNextBoolean()
  subpixel = gd.getNextBoolean()
  process = gd.getNextBoolean()
  virtual = gd.getNextBoolean()
  only_roi = gd.getNextBoolean()
  only_compute = gd.getNextBoolean()
  roi_z_min = int(gd.getNextNumber())
  roi_z_max = int(gd.getNextNumber())
  return channel, method, bg_value, virtual, multi_time_scale, subpixel, process, only_roi, only_compute, roi_z_min, roi_z_max

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def main():
    properties = ImageProperties(imp)
    # Create a GenericDialog to configure renaming:
    gd = GenericDialog('Gatan Reamer')
    gd.addMessage('Modifying: %s' % (imp.getTitle(),))
    gd.addMessage('Recorded: %s' % (properties.date.toString(),))
    gd.addNumericField('Exposure time', properties.exposure, 4, field_width, 's')
    gd.addNumericField('Magnification:', properties.magnification, 0, field_width, 'x')
    mag_units = ('kx', 'x')
    gd.addChoice('Magnification unit:', mag_units, mag_units[0])
    gd.addMessage('The actual magnification is %.2f times larger.' % (properties.mag_factor,))
    gd.addCheckbox('Use actual magnification:', False)
    gd.addMessage('')
    gd.addNumericField('Energy loss:', properties.energyloss, 1, field_width, 'eV')
    gd.addStringField('Date:', properties.date_string, field_width)
    gd.addStringField('original name:', properties.name, field_width_long)
    gd.addStringField('Filename format', default_format_str, field_width_long)
    gd.showDialog()

    if not gd.wasCanceled():
        # Edit the properties to consiter user choices:
        properties.exposure = gd.getNextNumber()
        mag = gd.getNextNumber()
        properties.mag_unit = gd.getNextChoice()
        if gd.getNextBoolean():
            properties.calc_mag(mag)
        properties.energyloss = gd.getNextNumber()
        properties.date_string = gd.getNextString()
        properties.name = gd.getNextString()
        format_str = gd.getNextString()
        # Chenge the title:
        imp.setTitle(format_str % properties.to_dict())

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def getOptions():
    lowerThreshold = 80;
    upperThreshold = 255;
    stepNumber = 1
    stepThreshold = 5;
    #p3DOCThreshold = 70;
    #p3DOCSlice = 1;
    p3DOCmin = 100;
    p3DOCmax = 2658480;
    gd = GenericDialog( "Parameters" )
    gd.addMessage("Binary mask thresholds")
    gd.addNumericField("Lower Threshold", lowerThreshold, 0)  # show 2 decimals  
    gd.addNumericField("Upper threshold", upperThreshold, 0)  # show 2 decimals  
    gd.addNumericField("Step number", stepNumber, 0)  # show 2 decimals  
    gd.addNumericField("Step threshold", stepThreshold, 0)  # show 2 decimals      
    gd.addMessage("3D Object Counter parameters")
    #gd.addNumericField("threshold", p3DOCThreshold, 0)  # show 2 decimals  
    gd.addNumericField("min.", p3DOCmin, 0)  # show 2 decimals  
    gd.addNumericField("max.", p3DOCmax, 0)  # show 2 decimals  
    gd.showDialog()  
    if gd.wasCanceled():  
        return  
    # Read out the options  
    lowerThreshold = gd.getNextNumber()
    upperThreshold = gd.getNextNumber()
    stepNumber = gd.getNextNumber()
    stepThreshold = gd.getNextNumber()
    #p3DOCThreshold = gd.getNextNumber()
    p3DOCmin = gd.getNextNumber()
    p3DOCmax = gd.getNextNumber()   
    return lowerThreshold, upperThreshold, stepNumber, stepThreshold, p3DOCmin, p3DOCmax      

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def run():
    ''' If someone tries to run this file by itself, warn them of their error.  Unfortunately, since I was too lazy to make Microscope_Calibrations a full plugin (rather than a script), this accompanying settings file will show up in the Scripts menu.'''
    from ij.gui import GenericDialog
    
    gd = GenericDialog("Microscope_Calibrations_user_settings.py")
    gd.addMessage("This file is only for adding functionality to the plugin 'Microscope Measurement Tools'.\nNothing is done when this settings file is run by itself."  )
    
    gd.showDialog()

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def Resize(imp):
	gd = GenericDialog("Image size")
	scales = ["1024","2048","4096"]
	gd.addChoice("Choose image size",scales,scales[1])
	gd.showDialog()
	scale_choice = gd.getNextChoice()
	IJ.run(imp,"Scale...", "x=- y=- z=1.0 width="+scale_choice+" height="+scale_choice+" interpolation=Bilinear average process create title=Scaled")
	scaled_imp = WindowManager.getImage("Scaled")
	return scaled_imp

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
	def _dialog(self,comment):
		gd = GenericDialog(comment)
		gd.enableYesNoCancel()
		gd.showDialog()
		if gd.wasCanceled():
			print "user cancelled dialog"
			sys.exit(1)
			
		option = gd.wasOKed()
		return option

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def get_results_filename():
    '''Prompt the user to suggest name of the output file.'''
    dialog = GenericDialog('Output results file')
    dialog.addStringField('Choose name without extension:', 'results')
    dialog.showDialog()
    name = dialog.getNextString()
    if dialog.wasCanceled():
        return None
    #TODO Check if file exists before and try again?
    return name + '.csv'

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def run():
    ''' If someone tries to run this file by itself, warn them of their error.  Unfortunately, since I was too lazy to make Microscope_Calibrations a full plugin (rather than a script), this accompanying settings file will show up in the Scripts menu.'''
    from ij.gui import GenericDialog
    
    gd = GenericDialog("Microscope_Calibrations_user_settings.py")
    gd.addMessage("This file is only for setting the microscope calibrations and settings for the plugins 'Microscope Measurement Tools'.\nNothing is done when this settings file is run by itself.\nPlease open this file in a text editor instead, to edit the calibrations.\n  \n"  +  \
    "The file should reside in a path like the following\n"  +  \
    "Fiji.app/plugins/Scripts/Analyze/Microscope Measurement Tools/Microscope_Calibrations_user_settings.py\n  "  +  "\n" +  \
    "Changes to the settings file are not automatically picked up by Fiji.  The workaround is to\n  1) Quit Fiji.\n  2) Delete the '$py.class' file 'Microscope_Calibrations_user_settings$py.class'\n  3) Open Fiji.  Make sure the new settings show up in 'Choose Microscope Calibration'."  )
    
    gd.showDialog()

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def getChannels():
	gd = GenericDialog( "Select stack's channels" )
	# print gd.getModalityType() 
	# gd.setModal( False )
	# print gd.getModalityType() 
	color = ["red", "green", "blue"]
	gd.addChoice("Channel for mask", color, color[2])
	gd.addChoice("Channel for particles", color, color[1])
	gd.showDialog()
	maskChannel = gd.getNextChoice()  
	partChannel = gd.getNextChoice()  
	if gd.wasCanceled():  
		sys.exit()
	return maskChannel, partChannel

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def create_selection_dialog(image_titles, defaults, title='Select images for processing'):
    gd = GenericDialog(title)
    # The build in function enumerate() returns two values:
    # The index and the value stored in the tuple/list.
    for index, default in enumerate(defaults):
        # for each loop we add a new choice element to the dialog.
        gd.addChoice('Image_'+ str(index + 1), image_titles, image_titles[default])
    gd.showDialog()
    if gd.wasCanceled():
        return None
    # This function returns a list.
    # _ is used as a placeholder for values we don't use.
    # The for loop is used to call gd.getNextChoiceIndex() len(defaults) times.
    return [gd.getNextChoiceIndex() for _ in defaults]

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def create_selection_dialog(image_titles, defaults, title='Select images for processing'):
    """
    Show a dialog to select the images to process and return a list of the selected ones (index).
    :param image_titles: A list of image titles presented for selection.
    :param defaults: The titles to be selected by default.
                     The length of this list defines the number of selectable images.
    :param title: the title of the dialog (default 'Select images for processing').
    """
    dialog = GenericDialog(title)
    for index, default in enumerate(defaults):
        dialog.addChoice('Image_'+ str(index + 1), image_titles, image_titles[default])
    dialog.showDialog()
    if dialog.wasCanceled():
        return None
    return [dialog.getNextChoiceIndex() for _ in defaults]

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def getOptions(imp):
  gd = GenericDialog("Correct 3D Drift Options")
  channels = []
  for ch in range(1, imp.getNChannels()+1 ):
    channels.append(str(ch))
  gd.addMessage("Select a channel to be used for the registration.")
  gd.addChoice("     channel:", channels, channels[0])
  gd.addCheckbox("Use virtualstack?", False)
  gd.addMessage("This will store the registered hyperstack as an image sequence and\nshould be used if free RAM is less than 2X the size of the hyperstack. ")
  gd.showDialog()
  if gd.wasCanceled():
    return
  channel = gd.getNextChoiceIndex() + 1  # zero-based
  virtual = gd.getNextBoolean()
  return channel, virtual

# 需要導入模塊: from ij.gui import GenericDialog [as 別名]
# 或者: from ij.gui.GenericDialog import showDialog [as 別名]
def get_options():
    """Ask user for input values."""
    dlg = GenericDialog("Options for Boxed Heatmap")
    dlg.addMessage("Boxed Heatmap settings")
    dlg.addMessage("Specify box size:")
    dlg.addNumericField("Width", 32, 0)
    dlg.addNumericField("Height", 32, 0)
    dlg.showDialog()
    if dlg.wasCanceled():
        print "User canceled dialog."
        return  None
    # Read out the options
    boxw = int(dlg.getNextNumber())
    boxh = int(dlg.getNextNumber())
    return boxw, boxh