Python Dataset.PatientID方法代碼示例

# 需要導入模塊: from dicom.dataset import Dataset [as 別名]
# 或者: from dicom.dataset.Dataset import PatientID [as 別名]
    def testTagExceptionPrint(self):
        # When printing datasets, a tag number should appear in error
        # messages
        ds = Dataset()
        ds.PatientID = "123456" # Valid value
        ds.SmallestImagePixelValue = 0 # Invalid value

        expected_msg = "Invalid tag (0028, 0106): object of type 'int' has no len()"

        self.failUnlessExceptionArgs(expected_msg, TypeError, lambda: str(ds))

# 需要導入模塊: from dicom.dataset import Dataset [as 別名]
# 或者: from dicom.dataset.Dataset import PatientID [as 別名]
    def testTagExceptionWalk(self):
        # When recursing through dataset, a tag number should appear in
        # error messages
        ds = Dataset()
        ds.PatientID = "123456" # Valid value
        ds.SmallestImagePixelValue = 0 # Invalid value

        expected_msg = "Invalid tag (0028, 0106): object of type 'int' has no len()"

        callback = lambda dataset, data_element: str(data_element)
        func = lambda: ds.walk(callback)

        self.failUnlessExceptionArgs(expected_msg, TypeError, func)

# 需要導入模塊: from dicom.dataset import Dataset [as 別名]
# 或者: from dicom.dataset.Dataset import PatientID [as 別名]
# create association with remote AE
print "Request association"
assoc = MyAE.RequestAssociation(RemoteAE)


# perform a DICOM ECHO
print "DICOM Echo ... ",
st = assoc.VerificationSOPClass.SCU(1)
print 'done with status "%s"' % st

print "DICOM FindSCU ... ",
d = Dataset()
d.PatientsName = args.searchstring
d.QueryRetrieveLevel = "PATIENT"
d.PatientID = "*"
st = assoc.PatientRootFindSOPClass.SCU(d, 1)
print 'done with status "%s"' % st

for ss in st:
    if not ss[1]:
        continue
    # print ss[1]
    try:
        d.PatientID = ss[1].PatientID
    except:
        continue
    print "Moving"
    print d
    assoc2 = MyAE.RequestAssociation(RemoteAE)
    gen = assoc2.PatientRootMoveSOPClass.SCU(d, 'PYNETDICOM', 1)

# 需要導入模塊: from dicom.dataset import Dataset [as 別名]
# 或者: from dicom.dataset.Dataset import PatientID [as 別名]
 def check_send_dicom_from_remoteAE(self,assoc):
     d = Dataset()
     d.PatientsName = self.patient_search
     d.QueryRetrieveLevel = "PATIENT"
     d.PatientID = "*"
     patients = [x[1] for x in assoc.PatientRootFindSOPClass.SCU(d, 1)][:-1]
     
     
     self.log.info("Checking %d Exams ",len(patients))
     
     # loop on patients
     for pp in patients:
         if pp.PatientName=="Service Patient":
             print "skiping Service Patient"
             continue
     
         #self.log.info("Checking %s ",pp.PatientName)
         # find studies
         d = Dataset()
         d.PatientID = pp.PatientID
         d.QueryRetrieveLevel = "STUDY"
         d.PatientName = ""
         d.StudyInstanceUID = ""
         d.StudyDate = ""
         d.StudyTime = ""
         d.StudyID = ""
         d.ModalitiesInStudy = ""
         d.StudyDescription = ""
         d.NumberOfStudyRelatedInstances=""
         studies = [x[1] for x in assoc.PatientRootFindSOPClass.SCU(d, 1)][:-1]
         
         # loop on studies
         for st in studies:
             #print "    %s - %s %s ||| %s " % (st.StudyDescription, st.StudyDate, st.StudyTime,st.NumberOfStudyRelatedInstances)
             d = Dataset()
             d.QueryRetrieveLevel = "SERIES"
             d.StudyInstanceUID = st.StudyInstanceUID
             d.PatientID = "" # st.PatientID #rrr
             d.StudyDescription = ""
             d.StudyDate = ""
             d.PatientName = ""
             d.StudyID = ""
             d.AcquisitionDate = ""
             
             d.SeriesInstanceUID = ""
             d.InstanceNumber = ""
             d.Modality = ""
             d.SeriesNumber = ""
             d.SeriesDescription = ""
             d.SeriesDate = ""
             d.SeriesTime = ""
             d.SeriesID = ""
             d.NumberOfSeriesRelatedInstances = ""
             series = [x[1] for x in assoc.PatientRootFindSOPClass.SCU(d, 1)][:-1]
             
             # print series uid and number of instances
             for se in series:
                 if se.NumberOfSeriesRelatedInstances==0 : 
                     log.info('Empyt Serie in %s_%s',se.StudyDescription,se.PatientName)
                 else:
                     (exa,suj,ser) = self.get_exam_suj_ser_from_dicom_dataset(se)
                     dic_dir = os.path.join(self.rootdir,exa,suj,ser)                        
                     if not os.path.isdir(dic_dir):
                         dic_dir+='_phase'
                         if not os.path.isdir(dic_dir):
                             (exa,suj,ser) = self.get_exam_suj_ser_from_dicom_dataset_new(se)
                             dic_dir = os.path.join(self.rootdir,exa,suj,ser)
                             if not os.path.isdir(dic_dir):
                                 # i can not ask image instance level so do not kwon about IMAGETYPE so I check i _phase exist
                                 dic_dir_p = os.path.join(self.rootdir,exa,suj,ser+'_phase')
                                 if os.path.isdir(dic_dir_p):
                                     dic_dir=dic_dir_p
                     
                     if os.path.isdir(dic_dir) :
                         nbdic = glob.glob(os.path.join(dic_dir,"*dic"))
                         #print "nbd %d  nbi %s" %(len(nbdic),se.NumberOfSeriesRelatedInstances)
                         if len(nbdic) !=  se.NumberOfSeriesRelatedInstances:
                             self.log.warning(" MISSING DICOMS found %d instead of %s in %s",len(nbdic),se.NumberOfSeriesRelatedInstances,dic_dir)
                     else :
                         self.log.warning(" MISSING SERIES : %s",dic_dir)

# 需要導入模塊: from dicom.dataset import Dataset [as 別名]
# 或者: from dicom.dataset.Dataset import PatientID [as 別名]
    def __downloadFromDali(self, foldername,
                           ptid,
                           series_description,
                           accession_number):

        print "making dir ", os.path.join(
            constants.dicom_dir, foldername)
        os.mkdir(os.path.join(
            constants.dicom_dir, foldername))

        def OnAssociateResponse(association):
            print "Association response received"

        def OnReceiveStore(SOPClass, DS):
            file_meta = Dataset()
            file_meta.MediaStorageSOPClassUID = DS.SOPClassUID
            file_meta.MediaStorageSOPInstanceUID = DS.SOPInstanceUID
            file_meta.ImplementationClassUID = DS.SOPClassUID
            filename = os.path.join(
                constants.dicom_dir, foldername, DS.SOPInstanceUID + ".dcm")
            print "making file ", filename
            ds = FileDataset(
                filename, {}, file_meta=file_meta, preamble="\0" * 128)
            ds.update(DS)
            ds.is_little_endian = True
            ds.is_implicit_VR = True

            ds.save_as(filename)
            # print "File %s written" % filename
            # must return appropriate status
            return SOPClass.Success

        self.MyAE.OnAssociateResponse = OnAssociateResponse
        self.MyAE.OnReceiveStore = OnReceiveStore

        # perform a DICOM ECHO
        try:
            print "DICOM Echo ... ",
            st = self.assoc.VerificationSOPClass.SCU(1)
            print 'done with status "%s"' % st
        except Exception as e:
            raise RuntimeError(
                "Error when testing connectiont to DALI: %s" % e)

        try:
            print "DICOM FindSCU ... ",
            d = Dataset()
            d.PatientsName = '*'
            d.PatientID = ptid
            d.SeriesDescription = series_description
            d.AccessionNumber = accession_number
            d.StudyInstanceUID = "*"
            d.SeriesInstanceUID = "*"
            d.QueryRetrieveLevel = "SERIES"
            st = self.assoc.PatientRootFindSOPClass.SCU(d, 1)
            print 'done with status "%s"' % st

        except Exception as e:
            raise RuntimeError(
                "Error when searching patient data from DALI: %s" % e)

        try:
            SSUIDs = [(d[1].StudyInstanceUID, d[1].SeriesInstanceUID)
                      for d in st
                      if isinstance(d[1],
                                    Dataset) and d[1].keys() != []]
            print SSUIDs
            if(SSUIDs == []):
                raise RuntimeError("No patient data matching query")
        except Exception as e:
            raise RuntimeError("Error when quering DALI: %s" % e)

        # send dataset using RTPlanStorageSOPClass
        for SSUID in SSUIDs[0:1]:
            try:
                print "DICOM GetSCU ... ",
                d = Dataset()
                d.QueryRetrieveLevel = "SERIES"
                d.StudyInstanceUID = SSUID[0]
                d.SeriesInstanceUID = SSUID[1]
                d.SeriesDescription = series_description
                d.SeriesDescription = accession_number
                d.PatientID = ptid
                st = self.assoc.PatientRootGetSOPClass.SCU(d, 1)
            except Exception as e:
                raise RuntimeError(
                    "Error when retrieving patient data from DALI: %s" % e)