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Python XSDataSampleCrystalMM.setShape方法代碼示例

本文整理匯總了Python中XSDataMXv1.XSDataSampleCrystalMM.setShape方法的典型用法代碼示例。如果您正苦於以下問題:Python XSDataSampleCrystalMM.setShape方法的具體用法?Python XSDataSampleCrystalMM.setShape怎麽用?Python XSDataSampleCrystalMM.setShape使用的例子?那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在XSDataMXv1.XSDataSampleCrystalMM的用法示例。


在下文中一共展示了XSDataSampleCrystalMM.setShape方法的1個代碼示例,這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚,您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: testSetDataModelInput

# 需要導入模塊: from XSDataMXv1 import XSDataSampleCrystalMM [as 別名]
# 或者: from XSDataMXv1.XSDataSampleCrystalMM import setShape [as 別名]

#.........這裏部分代碼省略.........

        xsDataGoniostat = XSDataGoniostat()
        xsDataGoniostat.setMaxOscillationSpeed(XSDataSpeed(0.2))
        xsDataGoniostat.setMinOscillationWidth(XSDataAngle(0.1))
        xsExperimentalCondition.setGoniostat(xsDataGoniostat)
        xsDataInputCCP4i.setExperimentalCondition(xsExperimentalCondition)

        # Sample
        from XSDataCommon import XSDataString
        from XSDataCommon import XSDataFloat
        from XSDataCommon import XSDataString

        from XSDataMXv1 import XSDataStructure
        from XSDataMXv1 import XSDataChain
        from XSDataMXv1 import XSDataAtom
        from XSDataMXv1 import XSDataLigand
        from XSDataMXv1 import XSDataSampleCrystalMM
        from XSDataMXv1 import XSDataChemicalCompositionMM
        from XSDataMXv1 import XSDataAtomicComposition
        from XSDataMXv1 import XSDataSolvent

        xsDataSampleCrystalMM = XSDataSampleCrystalMM()
        xsDataStructure = XSDataStructure()
        xsDataComposition = XSDataChemicalCompositionMM()

        xsDataChain = XSDataChain()
        xsDataChain.setType(XSDataString("protein"))
        xsDataChain.setNumberOfCopies(XSDataFloat(2))
        xsDataAtomicComposition = XSDataAtomicComposition()
        xsDataAtom1 = XSDataAtom()
        xsDataAtom1.setSymbol(XSDataString("Se"))
        xsDataAtom1.setNumberOf(XSDataFloat(4))
        xsDataAtomicComposition.addAtom(xsDataAtom1)

        xsDataChain.setHeavyAtoms(xsDataAtomicComposition)
        xsDataChain.setNumberOfMonomers(XSDataFloat(100))
        xsDataStructure.addChain(xsDataChain)

        xsDataChain2 = XSDataChain()
        xsDataChain2.setType(XSDataString("rna"))
        xsDataChain2.setNumberOfCopies(XSDataFloat(1))
        xsDataChain2.setNumberOfMonomers(XSDataFloat(60))
        xsDataStructure.addChain(xsDataChain2)

        xsDataLigand = XSDataLigand()
        xsDataLigand.setNumberOfCopies(XSDataFloat(2))
        xsDataLigand.setNumberOfLightAtoms(XSDataFloat(42))
        xsDataAtomicComposition = XSDataAtomicComposition()
        xsDataAtom2 = XSDataAtom()
        xsDataAtom2.setSymbol(XSDataString("Fe"))
        xsDataAtom2.setNumberOf(XSDataFloat(1))
        xsDataAtomicComposition.addAtom(xsDataAtom2)
        xsDataLigand.setHeavyAtoms(xsDataAtomicComposition)
        xsDataStructure.addLigand(xsDataLigand)
        xsDataStructure.setNumberOfCopiesInAsymmetricUnit(XSDataFloat(0.25))

        xsDataSolvent = XSDataSolvent()
        xsDataAtomicComposition = XSDataAtomicComposition()

        xsDataAtom3 = XSDataAtom()
        xsDataAtom3.setSymbol(XSDataString("Na"))
        xsDataAtom3.setConcentration(XSDataFloat(1000))
        xsDataAtom4 = XSDataAtom()
        xsDataAtom4.setSymbol(XSDataString("Cl"))
        xsDataAtom4.setConcentration(XSDataFloat(1000))

        xsDataAtomicComposition.addAtom(xsDataAtom3)
        xsDataAtomicComposition.addAtom(xsDataAtom4)
        xsDataSolvent.setAtoms(xsDataAtomicComposition)

        xsDataComposition.setStructure(xsDataStructure)
        xsDataComposition.setSolvent(xsDataSolvent)
        xsDataSampleCrystalMM.setChemicalComposition(xsDataComposition)

        xsDataSampleCrystalMM.setSize(XSDataSize(XSDataLength(0.2), XSDataLength(0.2), XSDataLength(0.2)))
        xsDataSampleCrystalMM.setSusceptibility(XSDataFloat(1.5))
        xsDataSampleCrystalMM.setShape(XSDataFloat(2))

        xsDataInputCCP4i.setSample(xsDataSampleCrystalMM)

        from XSDataMXv1 import XSDataDiffractionPlan

        xsDataDiffractionPlan = XSDataDiffractionPlan()

        xsDataDiffractionPlan.setAimedCompleteness(XSDataFloat(95.5))
        xsDataDiffractionPlan.setAimedIOverSigmaAtHighestResolution(XSDataFloat(2.5))
        xsDataDiffractionPlan.setAimedMultiplicity(XSDataFloat(95.5))
        xsDataDiffractionPlan.setAimedResolution(XSDataFloat(3))
        xsDataDiffractionPlan.setComplexity(XSDataString("full"))
        xsDataDiffractionPlan.setForcedSpaceGroup(XSDataString("P222"))
        xsDataDiffractionPlan.setMaxExposureTimePerDataCollection(XSDataFloat(10000))

        xsDataInputCCP4i.setDiffractionPlan(xsDataDiffractionPlan)

        from XSDataCommon import XSDataFile

        listInputDataFile = []
        xsDataFile = XSDataFile(XSDataString(self.strXSDataGenerateTemplateFile))
        listInputDataFile.append(xsDataFile)
        xsDataInputCCP4i.setDataFile(listInputDataFile)
開發者ID:IvarsKarpics,項目名稱:edna-mx,代碼行數:104,代碼來源:EDTestCasePluginUnitCCP4iv1_1.py


注:本文中的XSDataMXv1.XSDataSampleCrystalMM.setShape方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台,相關代碼片段篩選自各路編程大神貢獻的開源項目,源碼版權歸原作者所有,傳播和使用請參考對應項目的License;未經允許,請勿轉載。