Java OWLDataFactory.getOWLAnnotationAssertionAxiom方法代碼示例

import org.semanticweb.owlapi.model.OWLDataFactory; //導入方法依賴的package包/類
private void parseRow(String[] row) {
	OWLDataFactory df = graph.getDataFactory();
	OWLOntologyManager mgr = graph.getManager();
	String geneSetId = row[0];
	IRI geneSetIRI = IRI.create(prefix + geneSetId);
	String desc = row[1];
	OWLClass geneSetCls = df.getOWLClass(geneSetIRI);
	OWLAxiom ax = df.getOWLAnnotationAssertionAxiom(df.getRDFSLabel(),geneSetIRI, literal(desc));
	mgr.addAxiom(graph.getSourceOntology(), ax);
			
	// assume each value is an entity, e.g. gene
	for (int i=2; i < row.length; i++) {
		OWLNamedIndividual individual = df.getOWLNamedIndividual(IRI.create(prefix + row[i]));
		mgr.addAxiom(graph.getSourceOntology(), df.getOWLClassAssertionAxiom(geneSetCls, individual));
	}
}
 

import org.semanticweb.owlapi.model.OWLDataFactory; //導入方法依賴的package包/類
/**
 * Add an synonym annotation, plus an annotation on that annotation
 * that specified the type of synonym. The second annotation has the
 * property oio:hasSynonymType.
 *
 * @param ontology the current ontology
 * @param subject the subject of the annotation
 * @param type the IRI of the type of synonym
 * @param property the IRI of the annotation property.
 * @param value the literal value of the synonym
 * @return the synonym annotation axiom
 */
protected static OWLAnnotationAssertionAxiom synonym(
		OWLOntology ontology, OWLEntity subject, 
		OWLAnnotationValue type,
		OWLAnnotationProperty property, 
		OWLAnnotationValue value) {
	OWLOntologyManager manager = ontology.getOWLOntologyManager();
	OWLDataFactory dataFactory = manager.getOWLDataFactory();
	OWLAnnotationProperty hasSynonymType =
		dataFactory.getOWLAnnotationProperty(
			format.getIRI("oio:hasSynonymType"));
	OWLAnnotation annotation = 
		dataFactory.getOWLAnnotation(hasSynonymType, type);
	Set<OWLAnnotation> annotations = new HashSet<OWLAnnotation>();
	annotations.add(annotation);
	OWLAnnotationAssertionAxiom axiom =
		dataFactory.getOWLAnnotationAssertionAxiom(
			property, subject.getIRI(), value,
			annotations);
	manager.addAxiom(ontology, axiom);
	return axiom;
}
 

import org.semanticweb.owlapi.model.OWLDataFactory; //導入方法依賴的package包/類
private OWLAxiom labelAxiom(OWLDataFactory f, OWLNamedIndividual individual, String annLabel) {
	return 
			f.getOWLAnnotationAssertionAxiom(
					f.getOWLAnnotationProperty(OWLRDFVocabulary.RDFS_LABEL.getIRI()),
					individual.getIRI(),
					f.getOWLLiteral(annLabel));
}
 

import org.semanticweb.owlapi.model.OWLDataFactory; //導入方法依賴的package包/類
public static void addLabel(OWLNamedIndividual i, OWLGraphWrapper g, OWLReasoner reasoner) {
	OWLOntology ontology = g.getSourceOntology();
	Set<OWLClass> types = new HashSet<>();
	if (reasoner == null) {
		for (OWLClassExpression x : OwlHelper.getTypes(i, ontology)) {
			if (!x.isAnonymous()) {
				types.add((OWLClass) x);
			}
		}
	}
	else {
		 types = reasoner.getTypes(i, true).getFlattened();
	}
	StringBuffer iLabel = null;
	for (OWLClass type : types) {
		String label = g.getLabel(type);
		if (iLabel == null)
			iLabel = new StringBuffer("a");
		else
			iLabel.append(" & ");
		iLabel.append(" "+label);
	}
	OWLDataFactory df = g.getDataFactory();
	OWLAxiom ax =
			df.getOWLAnnotationAssertionAxiom(df.getOWLAnnotationProperty(OWLRDFVocabulary.RDFS_LABEL.getIRI()),
			i.getIRI(), 
			df.getOWLLiteral(iLabel.toString()));
	g.getManager().addAxiom(ontology,
			ax);
}
 

import org.semanticweb.owlapi.model.OWLDataFactory; //導入方法依賴的package包/類
/**
 * Convenience method for adding an annotation assertion to the
 * ontology.
 *
 * @param ontology the current ontology
 * @param subject the subject of the annotation
 * @param property the annotation property
 * @param value the annotation value
 * @return the annotation axiom
 */
protected static OWLAnnotationAssertionAxiom annotate(
		OWLOntology ontology, 
		OWLEntity subject,
		OWLAnnotationProperty property, 
		OWLAnnotationValue value) {
	OWLOntologyManager manager = ontology.getOWLOntologyManager();
	OWLDataFactory dataFactory = manager.getOWLDataFactory();
	OWLAnnotationAssertionAxiom axiom =
		dataFactory.getOWLAnnotationAssertionAxiom(
			property, subject.getIRI(), value);
	manager.addAxiom(ontology, axiom);
	return axiom;
}