本文整理匯總了Java中org.biojava3.core.sequence.io.DNASequenceCreator類的典型用法代碼示例。如果您正苦於以下問題：Java DNASequenceCreator類的具體用法？Java DNASequenceCreator怎麽用？Java DNASequenceCreator使用的例子？那麽, 這裏精選的類代碼示例或許可以為您提供幫助。
DNASequenceCreator類屬於org.biojava3.core.sequence.io包，在下文中一共展示了DNASequenceCreator類的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Java代碼示例。
示例1: filterFastaByLength
import org.biojava3.core.sequence.io.DNASequenceCreator; //導入依賴的package包/類
/**
* Filters a fasta file by length
*
* @param fastaIn the fasta file to filter
* @param fastaOut the filtered fasta file
* @param minLength the minimum contig length to keep
* @throws IOException
* @throws BioException
*/
public void filterFastaByLength(File fastaIn, File fastaOut, int minLength) throws IOException, BioException
{
FileWriter fw = new FileWriter(fastaOut.getAbsoluteFile());
String newLine = System.getProperty("line.separator");
FileInputStream inStream = new FileInputStream(fastaIn);
FastaReader<DNASequence, NucleotideCompound> fastaReader = new FastaReader<>(inStream,
new GenericFastaHeaderParser<DNASequence, NucleotideCompound>(),
new DNASequenceCreator(DNACompoundSet.getDNACompoundSet()));
LinkedHashMap<String, DNASequence> b = fastaReader.process();
for (Entry<String, DNASequence> entry : b.entrySet())
{
//System.out.println(entry.getValue().getOriginalHeader() + "=" + entry.getValue().getSequenceAsString());
if (entry.getValue().getSequenceAsString().length() >= minLength)
{
fw.write(">" + entry.getValue().getOriginalHeader() + newLine + entry.getValue().getSequenceAsString() + newLine);
}
}
fw.close();
}