本文整理匯總了C++中SiteContainer::setGeneralComments方法的典型用法代碼示例。如果您正苦於以下問題：C++ SiteContainer::setGeneralComments方法的具體用法？C++ SiteContainer::setGeneralComments怎麽用？C++ SiteContainer::setGeneralComments使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類SiteContainer的用法示例。
在下文中一共展示了SiteContainer::setGeneralComments方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的C++代碼示例。
示例1: appendAlignmentFromStream
void Clustal::appendAlignmentFromStream(std::istream& input, SiteContainer & sc) const throw (Exception)
{
// Checking the existence of specified file
if (!input) { throw IOException ("Clustal::read : fail to open file"); }
const Alphabet * alpha = sc.getAlphabet();
vector<BasicSequence> sequences;
string lineRead("");
Comments comments(1);
comments[0] = FileTools::getNextLine(input); // First line gives file generator.
lineRead = FileTools::getNextLine(input); // This is the first sequence of the first block.
string::size_type beginSeq = 0;
unsigned int count = 0;
for (size_t i = lineRead.size(); i > 0; i--) {
char c = lineRead[i-1];
if (c == ' ') {
count++;
if (count == nbSpacesBeforeSeq_) {
beginSeq = i - 1 + nbSpacesBeforeSeq_;
break;
}
}
else count = 0;
}
if (beginSeq == 0) throw IOException("Clustal::read. Bad intput file.");
unsigned int countSequences = 0;
//Read first sequences block:
bool test = true;
do {
sequences.push_back(BasicSequence(TextTools::removeSurroundingWhiteSpaces(lineRead.substr(0, beginSeq - nbSpacesBeforeSeq_)), lineRead.substr(beginSeq), alpha));
getline(input, lineRead, '\n');
countSequences++;
test = !TextTools::isEmpty(lineRead) && !TextTools::isEmpty(lineRead.substr(0, beginSeq - nbSpacesBeforeSeq_));
}
while (input && test);
// Read other blocks
lineRead = FileTools::getNextLine(input); // Read first sequence of next block.
while (!TextTools::isEmpty(lineRead)) {
// Read next block:
for (unsigned int i = 0; i < countSequences; ++i) {
// Complete sequences
if (TextTools::isEmpty(lineRead))
throw IOException("Clustal::read. Bad intput file.");
sequences[i].append(lineRead.substr(beginSeq));
getline(input, lineRead, '\n');
}
//At this point, lineRead is the first line after the current block.
lineRead = FileTools::getNextLine(input);
}
for (unsigned int i = 0; i < countSequences; ++i)
sc.addSequence(sequences[i], checkNames_);
sc.setGeneralComments(comments);
}