本文整理汇总了Python中MolKit.stringSelector.CompoundStringSelector类的典型用法代码示例。如果您正苦于以下问题：Python CompoundStringSelector类的具体用法？Python CompoundStringSelector怎么用？Python CompoundStringSelector使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
在下文中一共展示了CompoundStringSelector类的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_select_add_mols_allAtoms
def test_select_add_mols_allAtoms(self):
"""
test selecting with stringRepr of atoms of added mols
"""
stringSel = CompoundStringSelector()
selString = self.mols.allAtoms.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, self.mols.allAtoms)
self.assertEquals(selString, "stringSel:::/+/protease:::")示例2: test_select_subtract_mols
def test_select_subtract_mols(self):
"""
test selecting with stringRepr of subtracted mols
"""
stringSel = CompoundStringSelector()
diff_mols = self.mols - self.mols1
selString = diff_mols.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_mols)
self.assertEquals(selString, "stringSel/+/protease/-/stringSel")示例3: test_select_subtract_allAtoms
def test_select_subtract_allAtoms(self):
"""
test selecting with stringRepr of subtracted allAtoms
"""
stringSel = CompoundStringSelector()
diff_atoms = self.mols.allAtoms - self.mols1.allAtoms
selString = diff_atoms.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_atoms)
self.assertEquals(selString, "stringSel:::/+/protease:::/-/stringSel:::")示例4: test_select_subtract_residues
def test_select_subtract_residues(self):
"""
test selecting with stringRepr of subtracted residues
"""
stringSel = CompoundStringSelector()
diff_residues = self.mols.chains.residues - self.mols1.chains.residues
selString = diff_residues.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_residues)
self.assertEquals(selString, "stringSel::/+/protease::/-/stringSel::")示例5: test_select_union_atoms_all
def test_select_union_atoms_all(self):
"""
test selecting with stringRepr of union 2X atoms returning single copy
"""
stringSel = CompoundStringSelector()
diff_atoms = self.mols1.chains.residues.atoms | self.mols1.chains.residues.atoms
selString = diff_atoms.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_atoms)
self.assertEquals(selected, self.mols1.chains.residues.atoms)
self.assertEquals(selString, "stringSel:::")示例6: test_select_union_mols_single
def test_select_union_mols_single(self):
"""
test selecting with stringRepr of union 2X same mols returning single
"""
stringSel = CompoundStringSelector()
diff_mols = self.mols1 | self.mols1
selString = diff_mols.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_mols)
self.assertEquals(selected, self.mols1)
self.assertEquals(selString, "stringSel")示例7: test_select_intersect_residues_empty
def test_select_intersect_residues_empty(self):
"""
test selecting with stringRepr of empty intersected residues
"""
stringSel = CompoundStringSelector()
diff_residues = self.mols1.chains.residues & self.mols2.chains.residues
selString = diff_residues.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_residues)
self.assertEquals(selected, ResidueSet())
self.assertEquals(selString, "stringSel::/&/protease::")示例8: test_select_xor_chains
def test_select_xor_chains(self):
"""
test selecting with stringRepr of xor chains
"""
stringSel = CompoundStringSelector()
diff_chains = self.mols.chains ^ self.mols1.chains
selString = diff_chains.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_chains)
self.assertEquals(selected, self.mols2.chains)
self.assertEquals(selString, "stringSel:/+/protease:/^/stringSel:")示例9: test_select_xor_allAtoms_all
def test_select_xor_allAtoms_all(self):
"""
test selecting with stringRepr of xor allAtoms returning all
"""
stringSel = CompoundStringSelector()
diff_atoms = self.mols1.allAtoms ^ self.mols2.allAtoms
selString = diff_atoms.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_atoms)
self.assertEquals(selected, self.mols.allAtoms)
self.assertEquals(selString, "stringSel:::/^/protease:::")示例10: test_select_xor_mols_all
def test_select_xor_mols_all(self):
"""
test selecting with stringRepr of xor mols returning all
"""
stringSel = CompoundStringSelector()
diff_mols = self.mols1 ^ self.mols2
selString = diff_mols.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_mols)
self.assertEquals(selected, self.mols)
self.assertEquals(selString, "stringSel/^/protease")示例11: test_select_xor_residues_all
def test_select_xor_residues_all(self):
"""
test selecting with stringRepr of xor residues returning all
"""
stringSel = CompoundStringSelector()
diff_residues = self.mols1.chains.residues ^ self.mols2.chains.residues
selString = diff_residues.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_residues)
self.assertEquals(selected, self.mols.chains.residues)
self.assertEquals(selString, "stringSel::/^/protease::")示例12: test_select_intersect_allAtoms
def test_select_intersect_allAtoms(self):
"""
test selecting with stringRepr of intersected allAtoms
"""
stringSel = CompoundStringSelector()
diff_atoms = self.mols1.allAtoms & self.mols2.allAtoms
selString = diff_atoms.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_atoms)
self.assertEquals(selected, AtomSet())
self.assertEquals(selString, "stringSel:::/&/protease:::")示例13: test_select_xor_atoms
def test_select_xor_atoms(self):
"""
test selecting with stringRepr of xor atoms
"""
stringSel = CompoundStringSelector()
diff_atoms = self.mols.chains.residues.atoms ^ self.mols1.chains.residues.atoms
selString = diff_atoms.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_atoms)
self.assertEquals(selected, self.mols2.chains.residues.atoms)
self.assertEquals(selString, "stringSel:::/+/protease:::/^/stringSel:::")示例14: test_select_intersect_chains_empty
def test_select_intersect_chains_empty(self):
"""
test selecting with stringRepr of empty intersected chains
"""
stringSel = CompoundStringSelector()
diff_chains = self.mols1.chains & self.mols2.chains
selString = diff_chains.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_chains)
self.assertEquals(selected, ChainSet())
self.assertEquals(selString, "stringSel:/&/protease:")示例15: test_select_intersect_mols_empty
def test_select_intersect_mols_empty(self):
"""
test selecting with stringRepr of empty intersect mols
"""
stringSel = CompoundStringSelector()
diff_mols = self.mols1 & self.mols2
selString = diff_mols.stringRepr
selected, msg = stringSel.select(self.mols, selString, returnMsg=True)
self.assertEquals(selected, diff_mols)
self.assertEquals(selString, "stringSel/&/protease")
self.assertEquals(selected, ProteinSet())